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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS12340 and LRK55_RS12345 are separated by 249 nucleotides
LRK55_RS12345 and LRK55_RS12350 are separated by 64 nucleotides
LRK55_RS12350 and LRK55_RS12355 are separated by 158 nucleotides
LRK55_RS12355 and LRK55_RS12360 are separated by 215 nucleotides
LRK55_RS12340: LRK55_RS12340 - amino acid permease, at 2,741,327 to 2,742,655
_RS12340
LRK55_RS12345: LRK55_RS12345 - outer membrane beta-barrel protein, at 2,742,905 to 2,743,486
_RS12345
LRK55_RS12350: LRK55_RS12350 - PhzF family phenazine biosynthesis protein, at 2,743,551 to 2,744,429
_RS12350
LRK55_RS12355: LRK55_RS12355 - outer membrane beta-barrel protein, at 2,744,588 to 2,745,214
_RS12355
LRK55_RS12360: LRK55_RS12360 - fumarate hydratase, at 2,745,430 to 2,746,947
_RS12360
Group
Condition
LRK55
_RS12340
LRK55
_RS12345
LRK55
_RS12350
LRK55
_RS12355
LRK55
_RS12360
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
-0.1
-0.2
+0.0
+0.2
no stress control
no stress control
-0.1
-0.1
-0.0
-0.0
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
-0.0
-0.1
+0.0
+0.2
no stress control
no stress control
+0.1
-0.2
+0.2
-0.2
+0.1
no stress control
no stress control
-0.0
-0.1
+0.1
-0.1
+0.1
no stress control
no stress control
+0.1
-0.2
+0.2
-0.0
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.3
-0.1
+0.3
+0.1
+0.3
no stress control
no stress control
+0.1
+0.0
-0.1
+0.2
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
-0.3
+0.2
-0.1
+0.7
no stress control
no stress control
+0.0
-0.1
+0.4
-0.0
+0.2
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
-0.0
+0.1
+0.1
+0.3
no stress control
no stress control
-0.0
+0.1
+0.3
+0.1
+0.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
+0.0
+0.5
+0.0
+0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.3
-0.0
+0.1
+0.0
+0.9
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.0
-0.0
+0.5
+0.0
+0.3
pH
R2A_PIPES pH 4.5
+0.1
+0.1
+0.2
-0.1
+0.5
pH
R2A_PIPES pH 4.5
-0.0
+0.0
+0.2
+0.2
+0.5
stress
R2A with Zinc chloride 2560 uM
+0.0
-0.1
+0.4
-0.1
+0.6
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
+0.0
+0.5
+0.1
+0.4
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.0
+0.1
+0.5
+0.0
+0.4
stress
R2A with Zinc chloride 2560 uM
+0.1
-0.1
+0.5
+0.1
+0.5
pH
R2A_PIPES pH 4.25
+0.2
+0.7
-0.1
+0.3
+1.3
pH
R2A_PIPES pH 4.25
+0.4
+0.8
+0.2
+0.1
+1.0
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LRK55_RS12350
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