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Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS12330 and LRK55_RS12335 overlap by 4 nucleotides
LRK55_RS12335 and LRK55_RS12340 are separated by 51 nucleotides
LRK55_RS12340 and LRK55_RS12345 are separated by 249 nucleotides
LRK55_RS12345 and LRK55_RS12350 are separated by 64 nucleotides
LRK55_RS12330: LRK55_RS12330 - molybdopterin-dependent oxidoreductase, at 2,738,487 to 2,740,742
_RS12330
LRK55_RS12335: LRK55_RS12335 - (2Fe-2S)-binding protein, at 2,740,739 to 2,741,275
_RS12335
LRK55_RS12340: LRK55_RS12340 - amino acid permease, at 2,741,327 to 2,742,655
_RS12340
LRK55_RS12345: LRK55_RS12345 - outer membrane beta-barrel protein, at 2,742,905 to 2,743,486
_RS12345
LRK55_RS12350: LRK55_RS12350 - PhzF family phenazine biosynthesis protein, at 2,743,551 to 2,744,429
_RS12350
Group
Condition
LRK55
_RS12330
LRK55
_RS12335
LRK55
_RS12340
LRK55
_RS12345
LRK55
_RS12350
pH
R2A_PIPES pH 4.5
-2.5
-2.9
-0.0
+0.0
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
-1.8
-3.0
-0.3
-0.0
+0.1
pH
R2A_PIPES pH 4.5
-2.6
-2.7
+0.1
+0.1
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
-2.0
-2.7
-0.1
-0.3
+0.2
stress
R2A with Zinc chloride 2560 uM
-1.8
-3.5
+0.1
-0.1
+0.5
no stress control
no stress control
-1.4
-2.9
-0.1
-0.1
-0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-1.5
-2.2
-0.2
-0.1
-0.2
stress
R2A with Nickel (II) chloride 1696 uM
-1.4
-3.1
-0.1
+0.0
+0.5
pH
R2A_PIPES pH 4.25
-2.2
-2.5
+0.2
+0.7
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-1.6
-2.1
-0.3
-0.1
+0.3
no stress control
no stress control
-1.6
-1.8
+0.1
-0.2
+0.2
no stress control
no stress control
-1.5
-1.4
-0.0
-0.1
+0.1
stress
R2A with Zinc chloride 2560 uM
-2.2
-0.9
+0.0
-0.1
+0.4
no stress control
no stress control
-1.6
-1.3
-0.0
+0.1
+0.3
pH
R2A_PIPES pH 4.25
-1.9
-2.1
+0.4
+0.8
+0.2
no stress control
no stress control
-1.3
-1.3
+0.1
+0.0
-0.1
stress
R2A with Nickel (II) chloride 1696 uM
-1.7
-1.1
+0.1
-0.0
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.9
-1.3
-0.2
-0.0
-0.1
no stress control
no stress control
-1.5
-1.0
+0.1
-0.2
+0.2
no stress control
no stress control
-1.3
-1.3
+0.0
-0.1
+0.4
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-1.0
-1.6
-0.1
+0.0
+0.5
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.7
-0.7
+0.0
+0.1
+0.5
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.5
+0.3
+0.0
-0.0
+0.5
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