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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS12225 and LRK55_RS12230 overlap by 4 nucleotides
LRK55_RS12230 and LRK55_RS12235 are separated by 26 nucleotides
LRK55_RS12235 and LRK55_RS12240 are separated by 148 nucleotides
LRK55_RS12240 and LRK55_RS12245 are separated by 532 nucleotides
LRK55_RS12225: LRK55_RS12225 - DUF4129 domain-containing protein, at 2,714,452 to 2,715,972
_RS12225
LRK55_RS12230: LRK55_RS12230 - hypothetical protein, at 2,715,969 to 2,717,078
_RS12230
LRK55_RS12235: LRK55_RS12235 - MoxR family ATPase, at 2,717,105 to 2,718,079
_RS12235
LRK55_RS12240: LRK55_RS12240 - DUF58 domain-containing protein, at 2,718,228 to 2,719,535
_RS12240
LRK55_RS12245: LRK55_RS12245 - hypothetical protein, at 2,720,068 to 2,720,655
_RS12245
Group
Condition
LRK55
_RS12225
LRK55
_RS12230
LRK55
_RS12235
LRK55
_RS12240
LRK55
_RS12245
stress
R2A with Zinc chloride 2560 uM
-0.2
-0.3
-0.4
-0.6
-0.9
no stress control
no stress control
-0.4
-0.3
-0.3
-0.5
-0.7
stress
R2A with Zinc chloride 2560 uM
-0.2
-0.4
-0.5
-0.2
-0.8
pH
R2A_PIPES pH 4.5
-0.1
-0.3
-0.4
-0.5
-0.6
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
-0.1
-0.4
-0.7
-0.5
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
-0.0
-0.4
-0.8
-0.4
no stress control
no stress control
-0.4
-0.3
-0.2
-0.1
-0.7
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.3
-0.4
-0.0
-0.0
-0.6
no stress control
no stress control
-0.2
-0.1
-0.4
-0.0
-0.6
pH
R2A_PIPES pH 4.25
-0.1
-0.2
+0.1
-0.4
-0.6
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
-0.1
-0.1
-0.3
-0.5
no stress control
no stress control
-0.3
-0.4
-0.4
+0.3
-0.4
no stress control
no stress control
-0.2
+0.3
+0.0
-0.7
-0.4
no stress control
no stress control
-0.3
-0.4
+0.1
+0.3
-0.7
pH
R2A_PIPES pH 4.5
-0.1
-0.2
+0.2
-0.3
-0.5
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.0
+0.0
-0.2
-0.1
-0.6
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.0
-0.2
-0.0
-0.2
-0.5
pH
R2A_PIPES pH 4.25
-0.5
-0.3
+0.3
+0.5
-0.6
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.3
-0.4
-0.1
+0.5
-0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
-0.3
-0.0
+0.5
-0.4
no stress control
no stress control
+0.1
+0.1
-0.1
-0.1
-0.2
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
-0.2
+0.2
+0.1
-0.5
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.0
-0.3
+0.2
+0.7
-0.0
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