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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS11915 and LRK55_RS11920 overlap by 1 nucleotides
LRK55_RS11920 and LRK55_RS11925 are separated by 81 nucleotides
LRK55_RS11925 and LRK55_RS11935 are separated by 757 nucleotides
LRK55_RS11935 and LRK55_RS11940 are separated by 42 nucleotides
LRK55_RS11915: LRK55_RS11915 - YraN family protein, at 2,639,938 to 2,640,294
_RS11915
LRK55_RS11920: LRK55_RS11920 - penicillin-binding protein activator, at 2,640,294 to 2,642,228
_RS11920
LRK55_RS11925: LRK55_RS11925 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 2,642,310 to 2,643,134
_RS11925
LRK55_RS11935: LRK55_RS11935 - division/cell wall cluster transcriptional repressor MraZ, at 2,643,892 to 2,644,338
_RS11935
LRK55_RS11940: LRK55_RS11940 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 2,644,381 to 2,645,322
_RS11940
Group
Condition
LRK55
_RS11915
LRK55
_RS11920
LRK55
_RS11925
LRK55
_RS11935
LRK55
_RS11940
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.3
-1.7
-5.6
-1.6
N.D.
pH
R2A_PIPES pH 4.25
-0.1
-2.9
-4.3
-1.1
N.D.
pH
R2A_PIPES pH 4.25
+0.1
-3.1
-1.3
-3.2
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
-0.5
-2.6
-1.3
N.D.
no stress control
no stress control
-0.1
-0.5
-2.0
-1.8
N.D.
pH
R2A_PIPES pH 4.5
+0.2
-1.6
-1.6
-1.4
N.D.
stress
R2A with Zinc chloride 2560 uM
+0.0
-1.1
-1.6
-1.6
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.4
-0.6
-2.3
-1.8
N.D.
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
-0.7
-0.9
-1.9
N.D.
no stress control
no stress control
+0.4
-0.7
-1.5
-1.8
N.D.
stress
R2A with Zinc chloride 2560 uM
+0.5
-0.7
-0.4
-2.7
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.3
-1.5
-1.0
-1.0
N.D.
no stress control
no stress control
+0.3
-0.5
-1.3
-1.5
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
-0.2
-0.8
-1.6
N.D.
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
-0.6
-1.0
-1.1
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
-0.2
-0.5
-1.8
N.D.
no stress control
no stress control
+0.2
-0.5
-1.3
-0.8
N.D.
pH
R2A_PIPES pH 4.5
+0.2
-1.6
-0.4
-0.6
N.D.
no stress control
no stress control
+0.3
-0.5
-1.4
-0.7
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.3
-0.6
-0.6
-1.4
N.D.
no stress control
no stress control
+0.4
-0.6
-1.0
-1.0
N.D.
no stress control
no stress control
+0.3
-0.6
-1.5
-0.3
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.2
-0.0
-1.3
-0.8
N.D.
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