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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS11900 and LRK55_RS11905 are separated by 107 nucleotides
LRK55_RS11905 and LRK55_RS11910 are separated by 62 nucleotides
LRK55_RS11910 and LRK55_RS11915 are separated by 73 nucleotides
LRK55_RS11915 and LRK55_RS11920 overlap by 1 nucleotides
LRK55_RS11900: LRK55_RS11900 - nucleoside permease, at 2,636,456 to 2,637,736
_RS11900
LRK55_RS11905: LRK55_RS11905 - uracil-DNA glycosylase family protein, at 2,637,844 to 2,638,428
_RS11905
LRK55_RS11910: LRK55_RS11910 - FAD-linked oxidase C-terminal domain-containing protein, at 2,638,491 to 2,639,864
_RS11910
LRK55_RS11915: LRK55_RS11915 - YraN family protein, at 2,639,938 to 2,640,294
_RS11915
LRK55_RS11920: LRK55_RS11920 - penicillin-binding protein activator, at 2,640,294 to 2,642,228
_RS11920
Group
Condition
LRK55
_RS11900
LRK55
_RS11905
LRK55
_RS11910
LRK55
_RS11915
LRK55
_RS11920
pH
R2A_PIPES pH 4.25
-1.0
-1.3
+0.2
+0.1
-3.1
pH
R2A_PIPES pH 4.25
-0.3
-0.7
+0.6
-0.1
-2.9
stress
R2A with Zinc chloride 2560 uM
-1.3
+0.2
+0.2
+0.0
-1.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.4
+0.5
-0.5
+0.3
-1.7
pH
R2A_PIPES pH 4.5
-0.3
-0.4
+0.3
+0.2
-1.6
stress
R2A with Zinc chloride 2560 uM
-1.4
+0.2
-0.2
+0.5
-0.7
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.7
+0.5
-0.1
+0.3
-1.5
pH
R2A_PIPES pH 4.5
-0.7
+0.2
+0.6
+0.2
-1.6
no stress control
no stress control
-0.9
-0.1
+0.0
+0.3
-0.5
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.6
-0.9
-0.2
-0.1
-0.5
no stress control
no stress control
-0.8
+0.2
-0.2
+0.4
-0.7
no stress control
no stress control
-0.7
+0.2
-0.2
+0.2
-0.5
no stress control
no stress control
-0.6
+0.3
+0.1
-0.1
-0.5
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.5
+0.2
+0.4
-0.2
-0.7
stress
R2A with Nickel (II) chloride 1696 uM
-0.5
-0.4
+0.3
+0.1
-0.2
no stress control
no stress control
-0.3
-0.2
+0.4
+0.3
-0.6
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.5
+0.3
+0.3
+0.1
-0.6
no stress control
no stress control
-0.2
+0.2
+0.0
+0.4
-0.6
no stress control
no stress control
-0.4
+0.1
+0.4
+0.3
-0.5
stress
R2A with Nickel (II) chloride 1696 uM
-0.4
+0.3
+0.3
+0.1
-0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.2
+0.5
-0.1
+0.4
-0.6
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.4
+0.4
+0.8
+0.3
-0.6
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.6
+0.2
+0.4
+0.2
-0.0
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