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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS11485 and LRK55_RS11490 overlap by 4 nucleotides
LRK55_RS11490 and LRK55_RS11495 are separated by 34 nucleotides
LRK55_RS11495 and LRK55_RS11500 are separated by 51 nucleotides
LRK55_RS11500 and LRK55_RS11505 overlap by 4 nucleotides
LRK55_RS11485: LRK55_RS11485 - ATP-binding cassette domain-containing protein, at 2,531,923 to 2,532,759
_RS11485
LRK55_RS11490: LRK55_RS11490 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 2,532,756 to 2,533,532
_RS11490
LRK55_RS11495: LRK55_RS11495 - outer membrane lipid asymmetry maintenance protein MlaD, at 2,533,567 to 2,534,418
_RS11495
LRK55_RS11500: LRK55_RS11500 - ABC transporter substrate-binding protein, at 2,534,470 to 2,535,144
_RS11500
LRK55_RS11505: LRK55_RS11505 - STAS domain-containing protein, at 2,535,141 to 2,535,446
_RS11505
Group
Condition
LRK55
_RS11485
LRK55
_RS11490
LRK55
_RS11495
LRK55
_RS11500
LRK55
_RS11505
stress
R2A with Zinc chloride 2560 uM
-1.7
-1.9
-1.8
-1.9
N.D.
stress
R2A with Zinc chloride 2560 uM
-1.2
-1.7
-1.6
-2.1
N.D.
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.8
-1.2
-0.7
-1.3
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
-0.6
-1.3
-0.7
-1.0
N.D.
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-1.0
-0.7
-0.6
-1.1
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
-0.5
-0.9
-0.6
-1.0
N.D.
pH
R2A_PIPES pH 4.5
-0.6
-0.7
-0.3
-1.1
N.D.
no stress control
no stress control
-0.9
-0.5
-0.6
-0.8
N.D.
pH
R2A_PIPES pH 4.5
-0.5
-0.8
-0.4
-0.9
N.D.
no stress control
no stress control
-0.7
-0.5
-0.6
-0.8
N.D.
no stress control
no stress control
-0.6
-0.7
-0.5
-0.7
N.D.
no stress control
no stress control
-0.7
-0.3
-0.5
-0.9
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.6
-0.2
-0.3
-1.2
N.D.
no stress control
no stress control
-0.6
-0.5
-0.5
-0.6
N.D.
no stress control
no stress control
-0.5
-0.5
-0.4
-0.7
N.D.
no stress control
no stress control
-0.3
-0.5
-0.5
-0.6
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.0
-0.6
+0.0
-0.6
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.5
+0.2
-0.4
-0.2
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.4
+0.2
+0.2
-0.1
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.9
+0.9
+1.1
+1.0
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+1.8
+2.0
+1.9
+1.5
N.D.
pH
R2A_PIPES pH 4.25
+2.7
+2.5
+2.7
+1.7
N.D.
pH
R2A_PIPES pH 4.25
+2.6
+2.5
+2.6
+2.0
N.D.
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