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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS11450 and LRK55_RS11455 overlap by 4 nucleotides
LRK55_RS11455 and LRK55_RS11460 are separated by 88 nucleotides
LRK55_RS11460 and LRK55_RS11465 overlap by 4 nucleotides
LRK55_RS11465 and LRK55_RS11470 are separated by 5 nucleotides
LRK55_RS11450: LRK55_RS11450 - PilZ domain-containing protein, at 2,525,049 to 2,525,396
_RS11450
LRK55_RS11455: LRK55_RS11455 - DUF1631 family protein, at 2,525,393 to 2,527,687
_RS11455
LRK55_RS11460: LRK55_RS11460 - radical SAM family heme chaperone HemW, at 2,527,776 to 2,528,942
_RS11460
LRK55_RS11465: LRK55_RS11465 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase, at 2,528,939 to 2,529,538
_RS11465
LRK55_RS11470: LRK55_RS11470 - ribonuclease PH, at 2,529,544 to 2,530,275
_RS11470
Group
Condition
LRK55
_RS11450
LRK55
_RS11455
LRK55
_RS11460
LRK55
_RS11465
LRK55
_RS11470
pH
R2A_PIPES pH 4.25
+0.1
-0.2
-0.8
-0.3
-0.6
stress
R2A with Nickel (II) chloride 1696 uM
+0.0
+0.0
-0.5
-0.1
-0.8
no stress control
no stress control
-0.3
+0.1
-0.4
+0.1
-0.4
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.2
-0.5
+0.1
-0.6
pH
R2A_PIPES pH 4.25
+0.1
+0.1
-0.5
-0.0
-0.4
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.5
+0.0
-0.7
-0.1
-0.3
no stress control
no stress control
-0.1
+0.0
-0.4
+0.0
-0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.6
+0.2
-0.7
-0.0
-0.5
no stress control
no stress control
+0.3
+0.1
-0.4
-0.1
-0.3
no stress control
no stress control
+0.0
-0.1
-0.3
+0.1
-0.1
pH
R2A_PIPES pH 4.5
+0.2
+0.1
-0.5
-0.1
+0.0
no stress control
no stress control
+0.4
+0.2
-0.3
-0.1
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.2
+0.1
-0.1
-0.2
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.2
+0.2
-0.3
+0.0
-0.2
stress
R2A with Zinc chloride 2560 uM
+0.1
+0.1
-0.4
+0.1
-0.0
no stress control
no stress control
+0.3
-0.0
-0.3
+0.1
-0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.3
+0.0
-0.1
-0.3
+0.3
no stress control
no stress control
+0.3
+0.2
-0.3
+0.1
-0.1
pH
R2A_PIPES pH 4.5
+0.8
+0.2
-0.4
-0.3
+0.0
stress
R2A with Zinc chloride 2560 uM
+0.3
+0.2
-0.2
-0.0
+0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
+0.2
-0.2
-0.1
+0.6
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.2
+0.2
-0.1
+0.2
+0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
-0.0
-0.1
+0.2
+0.7
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