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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS11170 and LRK55_RS11175 are separated by 111 nucleotides
LRK55_RS11175 and LRK55_RS11180 are separated by 5 nucleotides
LRK55_RS11180 and LRK55_RS11185 are separated by 315 nucleotides
LRK55_RS11185 and LRK55_RS11190 are separated by 65 nucleotides
LRK55_RS11170: LRK55_RS11170 - alpha-galactosidase, at 2,461,390 to 2,463,507
_RS11170
LRK55_RS11175: LRK55_RS11175 - amidohydrolase family protein, at 2,463,619 to 2,464,749
_RS11175
LRK55_RS11180: LRK55_RS11180 - transcriptional repressor AgaR, at 2,464,755 to 2,465,534
_RS11180
LRK55_RS11185: LRK55_RS11185 - TonB-dependent receptor, at 2,465,850 to 2,468,543
_RS11185
LRK55_RS11190: LRK55_RS11190 - N-acetylmuramoyl-L-alanine amidase, at 2,468,609 to 2,469,400
_RS11190
Group
Condition
LRK55
_RS11170
LRK55
_RS11175
LRK55
_RS11180
LRK55
_RS11185
LRK55
_RS11190
pH
R2A_PIPES pH 4.25
-0.1
-0.1
-3.8
-0.0
-0.5
pH
R2A_PIPES pH 4.25
-0.0
-0.2
-4.1
-0.1
-0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.2
-0.1
-1.6
+0.1
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.0
-0.2
-1.7
+0.1
-0.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
-0.0
-1.5
-0.2
-0.0
pH
R2A_PIPES pH 4.5
-0.2
-0.2
-1.7
-0.0
+0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
+0.0
-1.0
+0.1
-0.8
stress
R2A with Zinc chloride 2560 uM
-0.1
-0.0
-1.7
+0.0
+0.2
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
-0.0
-1.4
-0.1
-0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
-0.1
-1.4
+0.1
-0.2
no stress control
no stress control
+0.0
+0.0
-1.1
+0.1
-0.5
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.0
+0.1
-1.4
+0.1
-0.2
no stress control
no stress control
+0.0
+0.1
-0.9
+0.0
-0.3
pH
R2A_PIPES pH 4.5
+0.2
+0.1
-1.6
+0.1
+0.2
no stress control
no stress control
+0.1
-0.1
-0.7
+0.2
-0.4
no stress control
no stress control
+0.1
-0.1
-0.9
+0.2
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
+0.0
-0.6
-0.1
-0.2
no stress control
no stress control
+0.1
+0.0
-1.1
+0.1
+0.2
stress
R2A with Zinc chloride 2560 uM
+0.1
+0.0
-1.3
+0.2
+0.3
no stress control
no stress control
-0.0
-0.2
-0.8
+0.0
+0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.2
+0.0
-1.0
+0.0
+0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.0
-0.0
-0.3
-0.1
-0.1
no stress control
no stress control
+0.2
+0.0
-0.7
+0.2
-0.1
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