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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS10925 and LRK55_RS10930 are separated by 33 nucleotides
LRK55_RS10930 and LRK55_RS10935 are separated by 112 nucleotides
LRK55_RS10935 and LRK55_RS10940 are separated by 279 nucleotides
LRK55_RS10940 and LRK55_RS10945 are separated by 177 nucleotides
LRK55_RS10925: LRK55_RS10925 - DUF6491 family protein, at 2,413,115 to 2,413,573
_RS10925
LRK55_RS10930: LRK55_RS10930 - ferritin-like domain-containing protein, at 2,413,607 to 2,414,428
_RS10930
LRK55_RS10935: LRK55_RS10935 - universal stress protein, at 2,414,541 to 2,414,957
_RS10935
LRK55_RS10940: LRK55_RS10940 - hypothetical protein, at 2,415,237 to 2,415,695
_RS10940
LRK55_RS10945: LRK55_RS10945 - hypothetical protein, at 2,415,873 to 2,416,355
_RS10945
Group
Condition
LRK55
_RS10925
LRK55
_RS10930
LRK55
_RS10935
LRK55
_RS10940
LRK55
_RS10945
stress
R2A with Zinc chloride 2560 uM
-0.5
+0.1
-1.8
+0.1
-0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
-0.4
-1.1
+0.2
-0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.4
-0.1
-1.0
+0.0
-0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.3
-0.3
-0.4
+0.1
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
-0.2
-0.7
+0.1
-0.0
no stress control
no stress control
-0.4
-0.1
-0.3
-0.0
-0.0
no stress control
no stress control
-0.8
-0.3
+0.1
+0.1
-0.1
no stress control
no stress control
+0.1
-0.2
-0.6
-0.1
+0.0
stress
R2A with Zinc chloride 2560 uM
-0.1
-0.1
-0.4
-0.0
-0.2
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
-0.0
-0.7
+0.0
+0.0
no stress control
no stress control
-0.3
+0.1
-0.4
+0.0
-0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
+0.0
-0.7
+0.2
+0.0
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.1
-0.9
+0.1
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.0
-0.2
-0.1
+0.0
-0.1
no stress control
no stress control
-0.2
+0.0
-0.0
+0.0
-0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.4
-0.2
+0.3
+0.1
-0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.0
+0.0
-0.3
+0.0
+0.0
pH
R2A_PIPES pH 4.25
+0.2
+0.4
-0.9
+0.3
+0.1
pH
R2A_PIPES pH 4.5
+0.3
+0.2
-0.3
+0.0
+0.1
no stress control
no stress control
+0.5
-0.0
-0.1
-0.0
+0.1
no stress control
no stress control
+0.3
+0.3
-0.1
+0.3
+0.2
pH
R2A_PIPES pH 4.25
+0.5
+0.1
-0.4
+0.2
+0.8
pH
R2A_PIPES pH 4.5
+0.3
+0.1
+0.5
+0.1
+0.5
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