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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS10705 and LRK55_RS10710 overlap by 4 nucleotides
LRK55_RS10710 and LRK55_RS10715 are separated by 205 nucleotides
LRK55_RS10715 and LRK55_RS10720 are separated by 33 nucleotides
LRK55_RS10720 and LRK55_RS10725 are separated by 90 nucleotides
LRK55_RS10705: LRK55_RS10705 - HutD family protein, at 2,356,712 to 2,357,263
_RS10705
LRK55_RS10710: LRK55_RS10710 - ATP-dependent DNA helicase DinG, at 2,357,260 to 2,359,380
_RS10710
LRK55_RS10715: LRK55_RS10715 - EAL domain-containing protein, at 2,359,586 to 2,362,537
_RS10715
LRK55_RS10720: LRK55_RS10720 - DsbA family oxidoreductase, at 2,362,571 to 2,363,224
_RS10720
LRK55_RS10725: LRK55_RS10725 - NAD(P)/FAD-dependent oxidoreductase, at 2,363,315 to 2,364,961
_RS10725
Group
Condition
LRK55
_RS10705
LRK55
_RS10710
LRK55
_RS10715
LRK55
_RS10720
LRK55
_RS10725
pH
R2A_PIPES pH 4.25
-1.2
-1.3
-0.0
-0.0
-0.2
pH
R2A_PIPES pH 4.25
+0.6
-0.8
+0.0
-0.6
-0.4
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.0
-1.0
+0.2
+0.0
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
-0.8
+0.0
-0.1
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
-0.7
+0.1
-0.1
+0.1
pH
R2A_PIPES pH 4.5
+0.1
-0.9
+0.0
+0.2
+0.1
no stress control
no stress control
-0.3
-0.2
+0.1
-0.1
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
-0.5
+0.1
-0.2
+0.3
stress
R2A with Nickel (II) chloride 1696 uM
+0.2
-0.6
+0.2
-0.0
-0.0
no stress control
no stress control
-0.0
-0.5
-0.0
+0.3
+0.1
pH
R2A_PIPES pH 4.5
+0.2
-0.5
+0.1
-0.0
+0.1
stress
R2A with Zinc chloride 2560 uM
-0.0
-0.5
+0.2
+0.0
+0.2
no stress control
no stress control
-0.0
-0.6
+0.2
+0.3
+0.1
no stress control
no stress control
+0.0
-0.5
+0.2
+0.2
+0.1
no stress control
no stress control
+0.3
-0.6
+0.1
+0.1
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.5
-0.7
-0.2
+0.2
+0.3
no stress control
no stress control
+0.4
-0.6
+0.1
+0.1
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
-0.2
+0.2
+0.2
+0.2
stress
R2A with Zinc chloride 2560 uM
+0.4
-0.6
+0.2
+0.2
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
-0.4
+0.3
+0.2
+0.3
no stress control
no stress control
+0.2
-0.4
+0.1
+0.1
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.6
-0.4
-0.2
+0.1
+0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
-0.5
+0.3
+0.3
+0.2
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