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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS10675 and LRK55_RS10680 are separated by 97 nucleotides
LRK55_RS10680 and LRK55_RS10685 are separated by 3 nucleotides
LRK55_RS10685 and LRK55_RS10690 are separated by 56 nucleotides
LRK55_RS10690 and LRK55_RS10695 are separated by 13 nucleotides
LRK55_RS10675: LRK55_RS10675 - NRDE family protein, at 2,352,139 to 2,352,918
_RS10675
LRK55_RS10680: LRK55_RS10680 - NAD-dependent DNA ligase LigB, at 2,353,016 to 2,354,701
_RS10680
LRK55_RS10685: LRK55_RS10685 - YchJ family metal-binding protein, at 2,354,705 to 2,355,106
_RS10685
LRK55_RS10690: LRK55_RS10690 - DUF938 domain-containing protein, at 2,355,163 to 2,355,759
_RS10690
LRK55_RS10695: LRK55_RS10695 - hypothetical protein, at 2,355,773 to 2,355,970
_RS10695
Group
Condition
LRK55
_RS10675
LRK55
_RS10680
LRK55
_RS10685
LRK55
_RS10690
LRK55
_RS10695
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
+0.1
-0.3
-0.2
-0.6
pH
R2A_PIPES pH 4.25
+0.0
+0.2
-0.2
+0.8
-1.9
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
+0.2
-0.2
-0.3
-0.8
no stress control
no stress control
-0.4
-0.1
-0.0
+0.0
-0.3
no stress control
no stress control
+0.1
-0.1
+0.1
-0.0
-0.6
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
-0.1
+0.1
-0.0
-0.7
no stress control
no stress control
-0.2
+0.0
+0.1
-0.2
-0.1
stress
R2A with Zinc chloride 2560 uM
+0.3
+0.0
-0.3
+0.1
-0.4
pH
R2A_PIPES pH 4.5
+0.2
+0.0
+0.1
+0.3
-0.8
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.3
+0.0
+0.1
+0.4
-0.2
pH
R2A_PIPES pH 4.25
+0.0
+0.5
-0.0
+0.5
-1.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.0
-0.1
-0.0
-0.0
+0.1
no stress control
no stress control
-0.2
+0.2
+0.1
+0.2
-0.1
no stress control
no stress control
-0.2
+0.0
+0.2
-0.1
+0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
+0.2
+0.2
+0.3
-0.7
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.2
-0.0
+0.2
-0.2
-0.0
pH
R2A_PIPES pH 4.5
-0.1
+0.1
+0.1
+0.5
-0.2
stress
R2A with Zinc chloride 2560 uM
+0.3
+0.2
+0.0
+0.0
-0.1
stress
R2A with Nickel (II) chloride 1696 uM
+0.2
+0.0
+0.4
+0.4
-0.4
no stress control
no stress control
-0.0
-0.0
+0.1
+0.3
+0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.2
+0.0
+0.2
+0.3
-0.1
stress
R2A with Nickel (II) chloride 1696 uM
+0.3
+0.3
+0.3
+0.4
-0.2
no stress control
no stress control
+0.2
+0.1
+0.3
+0.2
+0.2
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