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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS10665 and LRK55_RS10670 overlap by 4 nucleotides
LRK55_RS10670 and LRK55_RS10675 are separated by 9 nucleotides
LRK55_RS10675 and LRK55_RS10680 are separated by 97 nucleotides
LRK55_RS10680 and LRK55_RS10685 are separated by 3 nucleotides
LRK55_RS10665: LRK55_RS10665 - glutamate synthase large subunit, at 2,346,239 to 2,350,693
_RS10665
LRK55_RS10670: LRK55_RS10670 - FAD-dependent oxidoreductase, at 2,350,690 to 2,352,129
_RS10670
LRK55_RS10675: LRK55_RS10675 - NRDE family protein, at 2,352,139 to 2,352,918
_RS10675
LRK55_RS10680: LRK55_RS10680 - NAD-dependent DNA ligase LigB, at 2,353,016 to 2,354,701
_RS10680
LRK55_RS10685: LRK55_RS10685 - YchJ family metal-binding protein, at 2,354,705 to 2,355,106
_RS10685
Group
Condition
LRK55
_RS10665
LRK55
_RS10670
LRK55
_RS10675
LRK55
_RS10680
LRK55
_RS10685
no stress control
no stress control
-0.1
-0.1
-0.4
-0.1
-0.0
no stress control
no stress control
-0.2
-0.3
-0.2
+0.0
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.0
-0.2
-0.3
+0.0
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
-0.0
-0.1
+0.1
-0.3
no stress control
no stress control
-0.2
-0.1
-0.2
+0.0
+0.2
no stress control
no stress control
-0.1
-0.2
-0.0
-0.0
+0.1
no stress control
no stress control
-0.1
-0.3
+0.1
-0.1
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.1
-0.2
+0.1
-0.1
+0.1
stress
R2A with Zinc chloride 2560 uM
-0.0
-0.0
+0.3
+0.0
-0.3
pH
R2A_PIPES pH 4.25
+0.2
-0.2
+0.0
+0.2
-0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.0
+0.2
+0.0
-0.1
-0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.0
+0.0
+0.1
+0.2
-0.2
pH
R2A_PIPES pH 4.5
+0.1
-0.0
-0.1
+0.1
+0.1
no stress control
no stress control
+0.1
+0.0
-0.2
+0.2
+0.1
pH
R2A_PIPES pH 4.5
+0.0
-0.1
+0.2
+0.0
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
-0.2
+0.1
+0.2
+0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.0
+0.0
+0.2
-0.0
+0.2
no stress control
no stress control
-0.0
-0.1
+0.2
+0.1
+0.3
stress
R2A with Nickel (II) chloride 1696 uM
-0.0
-0.0
+0.2
+0.0
+0.4
stress
R2A with Zinc chloride 2560 uM
+0.1
+0.0
+0.3
+0.2
+0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
+0.1
+0.2
+0.0
+0.2
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
-0.0
+0.3
+0.3
+0.3
pH
R2A_PIPES pH 4.25
+0.2
+0.2
+0.0
+0.5
-0.0
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