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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS10395 and LRK55_RS10400 are separated by 13 nucleotides
LRK55_RS10400 and LRK55_RS10405 are separated by 80 nucleotides
LRK55_RS10405 and LRK55_RS10410 are separated by 73 nucleotides
LRK55_RS10410 and LRK55_RS10415 are separated by 31 nucleotides
LRK55_RS10395: LRK55_RS10395 - FmdE family protein, at 2,290,185 to 2,290,799
_RS10395
LRK55_RS10400: LRK55_RS10400 - DUF2249 domain-containing protein, at 2,290,813 to 2,291,079
_RS10400
LRK55_RS10405: LRK55_RS10405 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE, at 2,291,160 to 2,291,927
_RS10405
LRK55_RS10410: LRK55_RS10410 - amidohydrolase family protein, at 2,292,001 to 2,293,353
_RS10410
LRK55_RS10415: LRK55_RS10415 - glycerol-3-phosphate 1-O-acyltransferase PlsB, at 2,293,385 to 2,296,063
_RS10415
Group
Condition
LRK55
_RS10395
LRK55
_RS10400
LRK55
_RS10405
LRK55
_RS10410
LRK55
_RS10415
no stress control
no stress control
-0.3
-0.0
N.D.
-0.1
N.D.
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.1
+0.1
N.D.
-0.0
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
-0.3
N.D.
+0.1
N.D.
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
-0.1
N.D.
-0.1
N.D.
no stress control
no stress control
+0.1
-0.1
N.D.
-0.1
N.D.
no stress control
no stress control
-0.0
+0.0
N.D.
+0.0
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.2
+0.2
N.D.
+0.1
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.2
-0.0
N.D.
-0.1
N.D.
no stress control
no stress control
+0.1
+0.1
N.D.
-0.0
N.D.
stress
R2A with Zinc chloride 2560 uM
+0.1
+0.1
N.D.
-0.0
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
+0.3
N.D.
+0.0
N.D.
no stress control
no stress control
-0.1
+0.4
N.D.
-0.0
N.D.
no stress control
no stress control
-0.1
+0.2
N.D.
+0.2
N.D.
pH
R2A_PIPES pH 4.5
+0.2
+0.2
N.D.
-0.1
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
+0.2
+0.2
N.D.
-0.1
N.D.
pH
R2A_PIPES pH 4.5
+0.2
+0.4
N.D.
-0.1
N.D.
pH
R2A_PIPES pH 4.25
+0.1
+0.4
N.D.
+0.0
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
+0.5
N.D.
+0.1
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.0
+0.5
N.D.
+0.1
N.D.
no stress control
no stress control
-0.0
+0.7
N.D.
-0.0
N.D.
pH
R2A_PIPES pH 4.25
-0.0
+0.5
N.D.
+0.1
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
+0.2
+0.4
N.D.
+0.1
N.D.
stress
R2A with Zinc chloride 2560 uM
+0.2
+0.8
N.D.
+0.2
N.D.
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