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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS10335 and LRK55_RS10340 are separated by 18 nucleotides
LRK55_RS10340 and LRK55_RS10345 are separated by 139 nucleotides
LRK55_RS10345 and LRK55_RS10350 are separated by 186 nucleotides
LRK55_RS10350 and LRK55_RS10355 are separated by 164 nucleotides
LRK55_RS10335: LRK55_RS10335 - SprT family zinc-dependent metalloprotease, at 2,276,850 to 2,277,620
_RS10335
LRK55_RS10340: LRK55_RS10340 - sterol desaturase family protein, at 2,277,639 to 2,278,226
_RS10340
LRK55_RS10345: LRK55_RS10345 - alpha/beta hydrolase, at 2,278,366 to 2,279,310
_RS10345
LRK55_RS10350: LRK55_RS10350 - M1 family metallopeptidase, at 2,279,497 to 2,281,353
_RS10350
LRK55_RS10355: LRK55_RS10355 - EAL domain-containing protein, at 2,281,518 to 2,283,698
_RS10355
Group
Condition
LRK55
_RS10335
LRK55
_RS10340
LRK55
_RS10345
LRK55
_RS10350
LRK55
_RS10355
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.3
-0.1
-0.5
-0.0
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
+0.0
-0.8
+0.0
-0.0
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
-0.1
-0.3
-0.1
+0.1
stress
R2A with Zinc chloride 2560 uM
-0.5
+0.1
-0.4
+0.2
+0.2
no stress control
no stress control
-0.2
+0.1
-0.4
+0.0
+0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
+0.0
-0.3
-0.0
+0.1
no stress control
no stress control
+0.1
-0.2
-0.3
-0.0
+0.1
no stress control
no stress control
+0.3
-0.1
-0.3
-0.0
-0.2
pH
R2A_PIPES pH 4.5
-0.1
+0.1
-0.3
-0.0
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
-0.1
-0.2
+0.2
+0.0
pH
R2A_PIPES pH 4.5
+0.1
+0.1
-0.4
+0.1
+0.0
stress
R2A with Zinc chloride 2560 uM
-0.1
+0.1
-0.3
+0.0
+0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
-0.3
-0.1
+0.1
+0.3
pH
R2A_PIPES pH 4.25
+0.1
+0.4
-0.5
+0.1
+0.0
stress
R2A with Nickel (II) chloride 1696 uM
+0.3
-0.1
-0.1
-0.1
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.4
+0.1
-0.6
+0.2
+0.1
no stress control
no stress control
+0.1
+0.0
-0.1
+0.1
-0.0
no stress control
no stress control
+0.2
+0.0
-0.2
+0.1
+0.1
no stress control
no stress control
+0.0
+0.0
-0.0
+0.1
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
-0.2
-0.1
+0.2
+0.2
no stress control
no stress control
+0.2
-0.2
-0.1
+0.1
+0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.3
-0.0
-0.0
+0.3
+0.1
pH
R2A_PIPES pH 4.25
-0.1
+0.5
+0.3
+0.0
-0.0
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