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Cofit
Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS10090 and LRK55_RS10095 are separated by 155 nucleotides
LRK55_RS10095 and LRK55_RS10100 are separated by 12 nucleotides
LRK55_RS10100 and LRK55_RS10105 are separated by 269 nucleotides
LRK55_RS10105 and LRK55_RS10110 are separated by 152 nucleotides
LRK55_RS10090: LRK55_RS10090 - sterol desaturase family protein, at 2,216,325 to 2,217,587
_RS10090
LRK55_RS10095: LRK55_RS10095 - amino acid permease, at 2,217,743 to 2,219,251
_RS10095
LRK55_RS10100: LRK55_RS10100 - GGDEF domain-containing protein, at 2,219,264 to 2,220,334
_RS10100
LRK55_RS10105: LRK55_RS10105 - M61 family peptidase, at 2,220,604 to 2,222,502
_RS10105
LRK55_RS10110: LRK55_RS10110 - tRNA-Arg, at 2,222,655 to 2,222,731
_RS10110
Group
Condition
LRK55
_RS10090
LRK55
_RS10095
LRK55
_RS10100
LRK55
_RS10105
LRK55
_RS10110
pH
R2A_PIPES pH 4.25
-0.0
+0.4
-0.2
-2.4
N.D.
pH
R2A_PIPES pH 4.5
-0.1
-0.1
+0.0
-1.5
N.D.
pH
R2A_PIPES pH 4.5
+0.1
-0.3
+0.2
-1.6
N.D.
pH
R2A_PIPES pH 4.25
+0.2
+0.5
+0.0
-2.1
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
+0.0
+0.0
+0.0
-1.4
N.D.
no stress control
no stress control
-0.1
-0.1
+0.0
-1.2
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.1
+0.3
-1.6
N.D.
no stress control
no stress control
-0.1
-0.1
+0.1
-1.0
N.D.
no stress control
no stress control
-0.0
-0.2
+0.3
-1.1
N.D.
no stress control
no stress control
-0.0
+0.0
+0.1
-1.1
N.D.
no stress control
no stress control
+0.0
-0.0
+0.0
-1.0
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
+0.3
-0.1
-0.9
N.D.
no stress control
no stress control
+0.0
+0.0
+0.3
-1.2
N.D.
no stress control
no stress control
+0.0
+0.1
+0.2
-1.0
N.D.
stress
R2A with Zinc chloride 2560 uM
-0.0
-0.2
-0.1
-0.3
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
+0.2
+0.0
-0.9
N.D.
stress
R2A with Zinc chloride 2560 uM
+0.2
-0.2
-0.1
-0.4
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.0
-0.1
+0.0
-0.2
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.0
-0.1
+0.2
-0.3
N.D.
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.1
-0.1
-0.1
+0.1
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
-0.1
+0.2
-0.1
N.D.
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
-0.2
+0.3
-0.0
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
+0.1
+0.1
-0.2
N.D.
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