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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS09960 and LRK55_RS09965 are separated by 321 nucleotides
LRK55_RS09965 and LRK55_RS09970 overlap by 4 nucleotides
LRK55_RS09970 and LRK55_RS09975 are separated by 226 nucleotides
LRK55_RS09975 and LRK55_RS09980 overlap by 4 nucleotides
LRK55_RS09960: LRK55_RS09960 - dihydroxy-acid dehydratase, at 2,184,163 to 2,185,878
_RS09960
LRK55_RS09965: LRK55_RS09965 - 3-isopropylmalate dehydrogenase, at 2,186,200 to 2,187,297
_RS09965
LRK55_RS09970: LRK55_RS09970 - 3-isopropylmalate dehydratase small subunit, at 2,187,294 to 2,187,938
_RS09970
LRK55_RS09975: LRK55_RS09975 - 3-isopropylmalate dehydratase large subunit, at 2,188,165 to 2,189,577
_RS09975
LRK55_RS09980: LRK55_RS09980 - branched-chain amino acid transaminase, at 2,189,574 to 2,190,575
_RS09980
Group
Condition
LRK55
_RS09960
LRK55
_RS09965
LRK55
_RS09970
LRK55
_RS09975
LRK55
_RS09980
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
-0.2
-0.8
-0.4
+0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
-0.2
-1.5
+0.2
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.6
-0.4
-0.0
-0.2
+0.0
no stress control
no stress control
-0.4
-0.5
-0.1
+0.3
+0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.8
-0.0
-0.7
-0.5
+0.0
no stress control
no stress control
+0.2
-0.2
-0.2
-0.1
-0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.3
-0.4
-0.4
+0.2
-0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
-0.1
-0.4
+0.6
+0.1
no stress control
no stress control
+0.5
-0.2
-0.7
+0.0
+0.2
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
+0.4
-0.0
-0.0
-0.1
no stress control
no stress control
+0.4
-0.5
-0.2
+0.5
+0.0
pH
R2A_PIPES pH 4.25
+0.7
-0.4
-0.5
+0.1
+0.4
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.6
+0.2
-0.2
-0.6
+0.2
no stress control
no stress control
+0.4
-0.3
-0.0
+0.1
+0.0
pH
R2A_PIPES pH 4.25
+0.4
+0.1
-0.5
+0.5
-0.2
pH
R2A_PIPES pH 4.5
+0.3
-0.0
-0.4
+0.3
+0.1
stress
R2A with Zinc chloride 2560 uM
+0.1
+0.3
-0.4
+0.3
+0.1
stress
R2A with Zinc chloride 2560 uM
+0.2
+0.0
-0.4
+0.7
+0.1
no stress control
no stress control
+0.7
-0.2
-0.2
+0.5
-0.1
pH
R2A_PIPES pH 4.5
+0.4
-0.0
-0.0
+0.2
+0.2
no stress control
no stress control
+0.6
+0.1
-0.2
+0.0
+0.3
stress
R2A with Nickel (II) chloride 1696 uM
+0.4
+0.2
-0.2
+0.7
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.7
+0.6
-0.3
+0.5
+0.4
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