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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS09890 and LRK55_RS09895 are separated by 28 nucleotides
LRK55_RS09895 and LRK55_RS09900 overlap by 14 nucleotides
LRK55_RS09900 and LRK55_RS09905 are separated by 156 nucleotides
LRK55_RS09905 and LRK55_RS09910 are separated by 145 nucleotides
LRK55_RS09890: LRK55_RS09890 - sulfurtransferase, at 2,168,262 to 2,169,170
_RS09890
LRK55_RS09895: LRK55_RS09895 - 8-amino-7-oxononanoate synthase, at 2,169,199 to 2,170,404
_RS09895
LRK55_RS09900: LRK55_RS09900 - biotin synthase BioB, at 2,170,391 to 2,171,434
_RS09900
LRK55_RS09905: LRK55_RS09905 - multicopper oxidase domain-containing protein, at 2,171,591 to 2,173,570
_RS09905
LRK55_RS09910: LRK55_RS09910 - ComF family protein, at 2,173,716 to 2,174,438
_RS09910
Group
Condition
LRK55
_RS09890
LRK55
_RS09895
LRK55
_RS09900
LRK55
_RS09905
LRK55
_RS09910
no stress control
no stress control
+0.1
-0.2
+0.2
+0.2
-1.0
no stress control
no stress control
-0.2
+0.0
-0.1
+0.1
-0.4
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.1
-0.1
+0.1
-0.9
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
+0.1
-0.0
+0.2
-0.6
no stress control
no stress control
+0.1
-0.1
-0.1
+0.1
-0.5
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.4
-0.3
+0.0
+0.2
+0.0
no stress control
no stress control
-0.1
+0.0
-0.1
+0.3
-0.4
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.3
-0.3
+0.2
+0.0
-0.5
no stress control
no stress control
+0.1
+0.0
-0.1
+0.2
-0.5
stress
R2A with Zinc chloride 2560 uM
+0.2
+0.1
+0.2
+0.0
-0.8
no stress control
no stress control
+0.1
+0.3
+0.1
+0.1
-0.8
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.3
+0.1
+0.1
+0.3
-0.8
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
-0.2
+0.3
+0.2
-0.4
pH
R2A_PIPES pH 4.5
-0.1
+0.0
-0.1
+0.4
-0.2
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.3
+0.0
+0.1
-0.4
stress
R2A with Zinc chloride 2560 uM
+0.4
+0.2
+0.4
-0.2
-0.5
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.4
+0.1
+0.1
+0.3
-0.5
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.3
+0.1
-0.2
+0.3
-0.1
pH
R2A_PIPES pH 4.5
-0.1
-0.2
+0.1
+0.2
+0.4
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.7
+0.3
-0.4
+0.2
-0.2
no stress control
no stress control
+0.0
+0.3
+0.0
+0.2
+0.2
pH
R2A_PIPES pH 4.25
-0.1
+0.3
+0.2
+0.4
+0.5
pH
R2A_PIPES pH 4.25
+0.1
+0.8
-0.1
+0.4
+1.1
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