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Cofit
Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS09780 and LRK55_RS09785 are separated by 92 nucleotides
LRK55_RS09785 and LRK55_RS09790 are separated by 121 nucleotides
LRK55_RS09790 and LRK55_RS09795 are separated by 0 nucleotides
LRK55_RS09795 and LRK55_RS09800 are separated by 136 nucleotides
LRK55_RS09780: LRK55_RS09780 - LysM domain-containing protein, at 2,139,481 to 2,140,602
_RS09780
LRK55_RS09785: LRK55_RS09785 - DNA-processing protein DprA, at 2,140,695 to 2,141,870
_RS09785
LRK55_RS09790: LRK55_RS09790 - DNA topoisomerase I, at 2,141,992 to 2,144,493
_RS09790
LRK55_RS09795: LRK55_RS09795 - Sua5/YciO/YrdC/YwlC family protein, at 2,144,494 to 2,145,066
_RS09795
LRK55_RS09800: LRK55_RS09800 - AMP-binding protein, at 2,145,203 to 2,146,582
_RS09800
Group
Condition
LRK55
_RS09780
LRK55
_RS09785
LRK55
_RS09790
LRK55
_RS09795
LRK55
_RS09800
pH
R2A_PIPES pH 4.25
+0.2
+0.4
N.D.
N.D.
-4.4
pH
R2A_PIPES pH 4.25
+0.4
+1.0
N.D.
N.D.
-4.0
pH
R2A_PIPES pH 4.5
+0.0
+0.0
N.D.
N.D.
-1.1
no stress control
no stress control
+0.0
-0.5
N.D.
N.D.
-0.4
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.2
-0.6
N.D.
N.D.
-0.3
no stress control
no stress control
+0.0
-0.7
N.D.
N.D.
-0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.3
-0.2
N.D.
N.D.
-0.7
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
-0.2
N.D.
N.D.
-0.7
no stress control
no stress control
+0.1
-0.5
N.D.
N.D.
-0.2
pH
R2A_PIPES pH 4.5
+0.1
+0.3
N.D.
N.D.
-0.9
stress
R2A with Zinc chloride 2560 uM
+0.1
-0.1
N.D.
N.D.
-0.4
no stress control
no stress control
+0.2
-0.5
N.D.
N.D.
-0.1
stress
R2A with Zinc chloride 2560 uM
+0.2
+0.1
N.D.
N.D.
-0.4
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
+0.1
N.D.
N.D.
-0.2
no stress control
no stress control
+0.1
+0.0
N.D.
N.D.
-0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
-0.0
N.D.
N.D.
-0.2
no stress control
no stress control
+0.2
-0.1
N.D.
N.D.
-0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.0
+0.2
N.D.
N.D.
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.2
+0.0
N.D.
N.D.
-0.1
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
-0.3
N.D.
N.D.
+0.4
no stress control
no stress control
+0.1
+0.2
N.D.
N.D.
-0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.5
+0.2
N.D.
N.D.
-0.3
stress
R2A with Nickel (II) chloride 1696 uM
+0.2
+0.2
N.D.
N.D.
+0.4
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