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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS09675 and LRK55_RS09680 are separated by 493 nucleotides
LRK55_RS09680 and LRK55_RS09685 overlap by 4 nucleotides
LRK55_RS09685 and LRK55_RS09690 are separated by 22 nucleotides
LRK55_RS09690 and LRK55_RS09695 are separated by 27 nucleotides
LRK55_RS09675: LRK55_RS09675 - pre-peptidase C-terminal domain-containing protein, at 2,117,262 to 2,119,328
_RS09675
LRK55_RS09680: LRK55_RS09680 - hypothetical protein, at 2,119,822 to 2,120,085
_RS09680
LRK55_RS09685: LRK55_RS09685 - TIGR03862 family flavoprotein, at 2,120,082 to 2,121,320
_RS09685
LRK55_RS09690: LRK55_RS09690 - glutaminyl-peptide cyclotransferase, at 2,121,343 to 2,122,122
_RS09690
LRK55_RS09695: LRK55_RS09695 - ATP-dependent RNA helicase DbpA, at 2,122,150 to 2,123,529
_RS09695
Group
Condition
LRK55
_RS09675
LRK55
_RS09680
LRK55
_RS09685
LRK55
_RS09690
LRK55
_RS09695
pH
R2A_PIPES pH 4.25
-0.1
-0.5
-0.3
-0.5
-0.7
pH
R2A_PIPES pH 4.25
+0.0
-0.1
-1.2
-0.5
+0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.0
-0.6
-0.3
-0.2
-0.3
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
-0.3
-0.8
+0.1
-0.2
no stress control
no stress control
-0.2
-0.3
-0.4
-0.2
+0.1
no stress control
no stress control
-0.1
-0.6
-0.2
+0.0
-0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.0
-0.3
-0.4
+0.1
-0.3
no stress control
no stress control
-0.2
-0.6
+0.2
-0.2
-0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
-0.4
-0.3
+0.1
-0.1
no stress control
no stress control
-0.1
-0.5
+0.2
-0.2
-0.2
stress
R2A with Zinc chloride 2560 uM
-0.2
-0.2
-0.6
+0.5
-0.1
no stress control
no stress control
-0.1
-0.0
-0.3
-0.1
-0.0
stress
R2A with Zinc chloride 2560 uM
-0.2
-0.3
-0.1
+0.3
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
-0.4
+0.3
+0.0
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.0
-0.2
-0.4
+0.1
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.0
-0.1
+0.2
-0.1
-0.3
no stress control
no stress control
-0.1
-0.3
+0.0
-0.0
+0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
-0.4
+0.0
+0.2
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
-0.1
-0.1
+0.0
+0.1
no stress control
no stress control
+0.0
+0.2
-0.2
-0.1
-0.1
pH
R2A_PIPES pH 4.5
-0.0
+0.0
-0.0
-0.0
+0.0
pH
R2A_PIPES pH 4.5
+0.0
-0.3
-0.1
+0.1
+0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.0
+0.1
+0.1
+0.0
+0.1
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