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Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS09635 and LRK55_RS09640 overlap by 4 nucleotides
LRK55_RS09640 and LRK55_RS09645 overlap by 4 nucleotides
LRK55_RS09645 and LRK55_RS09650 are separated by 3 nucleotides
LRK55_RS09650 and LRK55_RS09655 are separated by 63 nucleotides
LRK55_RS09635: LRK55_RS09635 - PilN domain-containing protein, at 2,103,674 to 2,104,846
_RS09635
LRK55_RS09640: LRK55_RS09640 - type II secretion system protein GspM, at 2,104,843 to 2,105,490
_RS09640
LRK55_RS09645: LRK55_RS09645 - general secretion pathway protein GspN, at 2,105,487 to 2,106,212
_RS09645
LRK55_RS09650: LRK55_RS09650 - type II secretion system secretin GspD, at 2,106,216 to 2,108,546
_RS09650
LRK55_RS09655: LRK55_RS09655 - ATP-dependent helicase HrpB, at 2,108,610 to 2,111,117
_RS09655
Group
Condition
LRK55
_RS09635
LRK55
_RS09640
LRK55
_RS09645
LRK55
_RS09650
LRK55
_RS09655
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.7
-0.3
-2.0
-0.5
-0.4
pH
R2A_PIPES pH 4.25
+0.3
+0.7
-4.1
+0.2
-0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.4
-0.1
-1.9
-0.3
-0.3
no stress control
no stress control
-0.4
-0.5
-0.5
-0.5
-0.5
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.4
+0.2
-1.9
-0.0
-0.1
no stress control
no stress control
-0.3
-0.3
-1.0
-0.2
-0.1
pH
R2A_PIPES pH 4.25
+0.6
+0.4
-2.7
+0.1
-0.1
stress
R2A with Zinc chloride 2560 uM
-0.3
-0.2
-0.5
-0.5
-0.1
no stress control
no stress control
-0.7
-0.2
-0.3
-0.3
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
-0.1
-1.0
-0.2
-0.1
no stress control
no stress control
-0.7
-0.7
+0.6
-0.6
-0.1
no stress control
no stress control
-0.4
-0.2
-0.3
-0.4
-0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.0
-0.2
-0.5
-0.2
-0.2
stress
R2A with Zinc chloride 2560 uM
-0.4
-0.2
+0.7
-0.4
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.3
-0.1
+0.1
+0.0
-0.0
no stress control
no stress control
-0.1
-0.4
+0.3
-0.0
-0.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
+0.0
-0.2
+0.0
-0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.3
-0.0
+0.4
-0.2
-0.1
pH
R2A_PIPES pH 4.5
-0.1
-0.3
+1.3
-0.4
-0.2
pH
R2A_PIPES pH 4.5
+0.2
+0.0
+0.3
+0.0
-0.0
stress
R2A with Nickel (II) chloride 1696 uM
+0.0
+0.2
+0.1
+0.2
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
-0.2
+1.1
-0.2
+0.1
no stress control
no stress control
+0.1
+0.2
+0.8
+0.0
+0.2
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