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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS09585 and LRK55_RS09590 are separated by 13 nucleotides
LRK55_RS09590 and LRK55_RS09595 are separated by 59 nucleotides
LRK55_RS09595 and LRK55_RS09600 are separated by 303 nucleotides
LRK55_RS09600 and LRK55_RS09605 are separated by 1 nucleotides
LRK55_RS09585: LRK55_RS09585 - class I SAM-dependent methyltransferase, at 2,095,230 to 2,096,165
_RS09585
LRK55_RS09590: LRK55_RS09590 - pseudouridine synthase, at 2,096,179 to 2,096,715
_RS09590
LRK55_RS09595: LRK55_RS09595 - TatD family hydrolase, at 2,096,775 to 2,097,563
_RS09595
LRK55_RS09600: LRK55_RS09600 - type II secretion system ATPase GspE, at 2,097,867 to 2,099,600
_RS09600
LRK55_RS09605: LRK55_RS09605 - type II secretion system inner membrane protein GspF, at 2,099,602 to 2,100,819
_RS09605
Group
Condition
LRK55
_RS09585
LRK55
_RS09590
LRK55
_RS09595
LRK55
_RS09600
LRK55
_RS09605
pH
R2A_PIPES pH 4.25
-2.4
+0.5
-1.3
-0.0
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-1.5
-0.2
-0.1
-0.2
-0.7
no stress control
no stress control
-1.1
-0.1
-0.8
-0.2
-0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-1.0
-0.3
-0.7
-0.3
-0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-1.5
-0.4
-0.5
-0.1
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.9
-0.1
-0.5
-0.4
-0.4
pH
R2A_PIPES pH 4.5
-1.2
-0.1
-0.4
-0.2
-0.4
pH
R2A_PIPES pH 4.25
-1.8
-0.3
-0.3
+0.2
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-1.5
-0.1
-0.3
-0.1
-0.2
no stress control
no stress control
-0.8
-0.1
-0.6
-0.4
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-1.3
+0.0
-0.5
-0.3
-0.1
no stress control
no stress control
-0.8
-0.1
-0.7
-0.2
-0.3
stress
R2A with Zinc chloride 2560 uM
-1.1
+0.1
-0.4
-0.3
-0.4
stress
R2A with Zinc chloride 2560 uM
-1.2
+0.0
-0.1
-0.3
-0.4
no stress control
no stress control
-1.1
+0.4
-0.6
-0.5
-0.1
no stress control
no stress control
-1.0
-0.2
-0.5
-0.2
+0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
-1.2
+0.1
-0.5
-0.1
+0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-1.4
+0.2
-0.3
+0.0
-0.0
stress
R2A with Nickel (II) chloride 1696 uM
-0.9
+0.1
-0.5
-0.1
-0.0
stress
R2A with Nickel (II) chloride 1696 uM
-0.9
-0.2
-0.3
-0.0
+0.1
no stress control
no stress control
-0.5
-0.1
-0.4
-0.1
-0.2
pH
R2A_PIPES pH 4.5
-0.9
-0.1
-0.3
+0.2
+0.0
no stress control
no stress control
-0.5
+0.1
-0.2
-0.2
-0.1
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