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Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS09565 and LRK55_RS09570 are separated by 109 nucleotides
LRK55_RS09570 and LRK55_RS09575 are separated by 61 nucleotides
LRK55_RS09575 and LRK55_RS09580 are separated by 87 nucleotides
LRK55_RS09580 and LRK55_RS09585 are separated by 76 nucleotides
LRK55_RS09565: LRK55_RS09565 - hypothetical protein, at 2,091,996 to 2,092,199
_RS09565
LRK55_RS09570: LRK55_RS09570 - LysR substrate-binding domain-containing protein, at 2,092,309 to 2,093,229
_RS09570
LRK55_RS09575: LRK55_RS09575 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 2,093,291 to 2,094,403
_RS09575
LRK55_RS09580: LRK55_RS09580 - NYN domain-containing protein, at 2,094,491 to 2,095,153
_RS09580
LRK55_RS09585: LRK55_RS09585 - class I SAM-dependent methyltransferase, at 2,095,230 to 2,096,165
_RS09585
Group
Condition
LRK55
_RS09565
LRK55
_RS09570
LRK55
_RS09575
LRK55
_RS09580
LRK55
_RS09585
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
N.D.
-0.1
+0.0
-0.1
-1.5
pH
R2A_PIPES pH 4.25
N.D.
+0.1
+0.0
+0.7
-2.4
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
N.D.
-0.3
-0.2
-0.0
-1.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
N.D.
-0.2
+0.2
+0.1
-1.5
pH
R2A_PIPES pH 4.5
N.D.
-0.2
+0.0
-0.0
-1.2
no stress control
no stress control
N.D.
-0.1
+0.0
-0.3
-1.0
stress
R2A with Zinc chloride 2560 uM
N.D.
-0.4
+0.1
+0.2
-1.1
stress
R2A with Nickel (II) chloride 1696 uM
N.D.
-0.1
-0.0
-0.2
-0.9
stress
R2A with Metal_ion_mix_sitestressplate 2 x
N.D.
-0.1
+0.1
+0.4
-1.5
no stress control
no stress control
N.D.
+0.1
-0.1
-0.3
-0.8
no stress control
no stress control
N.D.
+0.2
-0.0
-0.1
-1.1
pH
R2A_PIPES pH 4.25
N.D.
+0.3
+0.3
+0.2
-1.8
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
N.D.
+0.2
+0.0
+0.2
-1.3
stress
R2A with Zinc chloride 2560 uM
N.D.
+0.1
+0.2
+0.0
-1.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
N.D.
+0.0
+0.3
+0.2
-1.4
no stress control
no stress control
N.D.
+0.0
+0.1
+0.1
-1.1
pH
R2A_PIPES pH 4.5
N.D.
+0.1
+0.1
-0.0
-0.9
no stress control
no stress control
N.D.
+0.2
-0.1
-0.0
-0.8
stress
R2A_PIPES with Cadmium chloride 64 uM
N.D.
+0.1
+0.2
+0.2
-1.2
stress
R2A with Nickel (II) chloride 1696 uM
N.D.
+0.1
+0.1
+0.1
-0.9
stress
R2A_PIPES with Cadmium chloride 64 uM
N.D.
-0.0
+0.0
+0.4
-0.9
no stress control
no stress control
N.D.
-0.0
+0.0
+0.2
-0.5
no stress control
no stress control
N.D.
+0.0
+0.1
+0.1
-0.5
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