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Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS09520 and LRK55_RS09525 are separated by 5 nucleotides
LRK55_RS09525 and LRK55_RS09530 overlap by 1 nucleotides
LRK55_RS09530 and LRK55_RS09535 are separated by 2 nucleotides
LRK55_RS09535 and LRK55_RS09540 are separated by 66 nucleotides
LRK55_RS09520: LRK55_RS09520 - Fic family protein, at 2,078,287 to 2,079,372
_RS09520
LRK55_RS09525: LRK55_RS09525 - site-specific DNA-methyltransferase, at 2,079,378 to 2,082,227
_RS09525
LRK55_RS09530: LRK55_RS09530 - ATP-binding protein, at 2,082,227 to 2,083,885
_RS09530
LRK55_RS09535: LRK55_RS09535 - 3'-5' exonuclease, at 2,083,888 to 2,086,068
_RS09535
LRK55_RS09540: LRK55_RS09540 - LysM peptidoglycan-binding domain-containing protein, at 2,086,135 to 2,086,467
_RS09540
Group
Condition
LRK55
_RS09520
LRK55
_RS09525
LRK55
_RS09530
LRK55
_RS09535
LRK55
_RS09540
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.6
-0.8
-0.5
-0.5
-0.4
pH
R2A_PIPES pH 4.5
-0.8
-0.4
-0.8
-0.4
-0.0
stress
R2A with Nickel (II) chloride 1696 uM
-0.6
-0.4
-0.3
-0.4
-0.4
pH
R2A_PIPES pH 4.25
-0.3
-0.6
-0.9
-0.3
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.8
-0.3
-0.6
-0.3
+0.2
pH
R2A_PIPES pH 4.5
-0.5
-0.3
-0.5
-0.4
-0.2
pH
R2A_PIPES pH 4.25
-0.5
-0.4
-0.4
-0.3
-0.2
stress
R2A with Zinc chloride 2560 uM
-0.6
-0.4
-0.5
-0.3
+0.0
stress
R2A with Nickel (II) chloride 1696 uM
-0.5
-0.3
-0.4
-0.2
-0.2
stress
R2A with Zinc chloride 2560 uM
-0.5
-0.4
-0.5
-0.1
+0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.4
-0.2
-0.4
-0.3
-0.3
no stress control
no stress control
-0.3
-0.2
-0.4
-0.3
-0.4
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.4
-0.3
-0.5
-0.3
-0.0
no stress control
no stress control
-0.5
-0.3
-0.5
-0.3
+0.1
no stress control
no stress control
-0.5
-0.4
-0.4
-0.3
-0.0
no stress control
no stress control
-0.5
-0.3
-0.5
-0.5
+0.3
no stress control
no stress control
-0.3
-0.1
-0.6
-0.1
-0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.5
-0.5
-0.3
-0.2
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.8
-0.1
-0.3
-0.0
-0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.3
-0.4
-0.4
-0.2
+0.1
no stress control
no stress control
-0.5
-0.3
-0.4
-0.2
+0.2
no stress control
no stress control
-0.4
-0.2
-0.4
-0.2
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.3
-0.1
-0.4
-0.1
+0.2
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