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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS09210 and LRK55_RS09215 are separated by 288 nucleotides
LRK55_RS09215 and LRK55_RS09220 are separated by 139 nucleotides
LRK55_RS09220 and LRK55_RS09225 are separated by 115 nucleotides
LRK55_RS09225 and LRK55_RS09230 are separated by 122 nucleotides
LRK55_RS09210: LRK55_RS09210 - hypothetical protein, at 2,019,716 to 2,020,285
_RS09210
LRK55_RS09215: LRK55_RS09215 - AraC family transcriptional regulator, at 2,020,574 to 2,021,428
_RS09215
LRK55_RS09220: LRK55_RS09220 - carboxymuconolactone decarboxylase family protein, at 2,021,568 to 2,022,125
_RS09220
LRK55_RS09225: LRK55_RS09225 - EthD family reductase, at 2,022,241 to 2,022,561
_RS09225
LRK55_RS09230: LRK55_RS09230 - hypothetical protein, at 2,022,684 to 2,023,103
_RS09230
Group
Condition
LRK55
_RS09210
LRK55
_RS09215
LRK55
_RS09220
LRK55
_RS09225
LRK55
_RS09230
pH
R2A_PIPES pH 4.25
-0.2
+0.0
-1.9
+0.4
+0.2
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
-0.1
-1.2
-0.0
-0.0
pH
R2A_PIPES pH 4.25
-0.2
-0.4
-0.9
-0.1
+0.4
no stress control
no stress control
+0.1
-0.2
-0.4
-0.3
-0.2
no stress control
no stress control
+0.2
-0.2
-0.2
-0.2
-0.4
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
-0.1
-0.6
+0.0
-0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.3
-0.2
-1.1
+0.2
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
+0.2
-0.5
+0.2
-0.6
pH
R2A_PIPES pH 4.5
+0.0
-0.1
-0.3
+0.1
-0.1
no stress control
no stress control
-0.1
-0.1
-0.3
+0.1
-0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
-0.2
-0.4
-0.0
+0.0
no stress control
no stress control
+0.1
+0.1
-0.1
-0.1
-0.4
stress
R2A with Zinc chloride 2560 uM
-0.0
+0.2
-0.2
+0.1
-0.3
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.1
-0.5
-0.1
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
+0.2
-0.2
+0.1
-0.2
stress
R2A with Zinc chloride 2560 uM
+0.1
-0.3
+0.1
+0.3
-0.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
+0.2
-0.5
+0.2
+0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.5
-0.0
-0.3
+0.1
-0.1
no stress control
no stress control
+0.2
-0.2
-0.1
+0.3
+0.1
no stress control
no stress control
+0.3
+0.0
+0.1
+0.1
-0.2
no stress control
no stress control
+0.4
+0.2
-0.3
+0.1
-0.0
pH
R2A_PIPES pH 4.5
+0.3
+0.2
-0.1
+0.3
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.2
+0.1
+0.2
+0.2
+0.1
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