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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS09005 and LRK55_RS09010 overlap by 11 nucleotides
LRK55_RS09010 and LRK55_RS09015 overlap by 4 nucleotides
LRK55_RS09015 and LRK55_RS09020 overlap by 4 nucleotides
LRK55_RS09020 and LRK55_RS09025 overlap by 4 nucleotides
LRK55_RS09005: LRK55_RS09005 - AIPR family protein, at 1,972,998 to 1,974,791
_RS09005
LRK55_RS09010: LRK55_RS09010 - PD-(D/E)XK motif protein, at 1,974,781 to 1,975,776
_RS09010
LRK55_RS09015: LRK55_RS09015 - Z1 domain-containing protein, at 1,975,773 to 1,978,667
_RS09015
LRK55_RS09020: LRK55_RS09020 - ATP-binding protein, at 1,978,664 to 1,980,175
_RS09020
LRK55_RS09025: LRK55_RS09025 - sigma-70 family RNA polymerase sigma factor, at 1,980,172 to 1,980,741
_RS09025
Group
Condition
LRK55
_RS09005
LRK55
_RS09010
LRK55
_RS09015
LRK55
_RS09020
LRK55
_RS09025
stress
R2A with Nickel (II) chloride 1696 uM
-0.4
-0.0
-0.3
-0.1
-2.2
pH
R2A_PIPES pH 4.25
-0.5
-0.1
-0.3
-0.2
-0.4
stress
R2A with Zinc chloride 2560 uM
-0.1
-0.1
-0.1
+0.2
-1.3
stress
R2A with Zinc chloride 2560 uM
+0.0
-0.4
-0.1
+0.1
-1.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
-0.0
-0.0
+0.1
-1.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
-0.2
-0.0
+0.1
-1.0
pH
R2A_PIPES pH 4.5
-0.4
-0.1
-0.3
-0.3
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
+0.0
-0.2
-0.1
-0.7
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
+0.2
-0.1
+0.2
-0.9
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
-0.0
-0.0
-0.1
-0.3
no stress control
no stress control
-0.2
+0.0
-0.2
-0.2
+0.0
no stress control
no stress control
-0.1
+0.1
-0.1
+0.1
-0.4
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
+0.2
-0.1
+0.1
-0.6
no stress control
no stress control
-0.2
+0.1
-0.0
-0.0
-0.3
no stress control
no stress control
-0.1
-0.1
-0.0
+0.0
-0.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.0
-0.0
+0.0
+0.1
-0.4
no stress control
no stress control
-0.1
+0.1
-0.1
-0.1
-0.1
no stress control
no stress control
+0.1
+0.3
+0.0
+0.2
-0.6
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.0
+0.1
+0.1
-0.1
+0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.2
-0.1
-0.0
-0.0
+0.2
pH
R2A_PIPES pH 4.5
-0.2
+0.2
-0.0
+0.2
+0.6
no stress control
no stress control
-0.2
+0.3
+0.0
+0.2
+0.7
pH
R2A_PIPES pH 4.25
-0.1
-0.3
+0.1
+0.3
+1.5
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