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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS08960 and LRK55_RS08965 overlap by 4 nucleotides
LRK55_RS08965 and LRK55_RS08970 are separated by 54 nucleotides
LRK55_RS08970 and LRK55_RS08975 are separated by 165 nucleotides
LRK55_RS08975 and LRK55_RS08980 are separated by 140 nucleotides
LRK55_RS08960: LRK55_RS08960 - pyridoxine/pyridoxal/pyridoxamine kinase, at 1,966,174 to 1,967,037
_RS08960
LRK55_RS08965: LRK55_RS08965 - cytoplasmic protein, at 1,967,034 to 1,967,303
_RS08965
LRK55_RS08970: LRK55_RS08970 - competence/damage-inducible protein A, at 1,967,358 to 1,968,188
_RS08970
LRK55_RS08975: LRK55_RS08975 - superoxide dismutase family protein, at 1,968,354 to 1,968,806
_RS08975
LRK55_RS08980: LRK55_RS08980 - DUF2024 family protein, at 1,968,947 to 1,969,216
_RS08980
Group
Condition
LRK55
_RS08960
LRK55
_RS08965
LRK55
_RS08970
LRK55
_RS08975
LRK55
_RS08980
pH
R2A_PIPES pH 4.25
-0.0
-0.6
-0.1
+0.1
-1.3
pH
R2A_PIPES pH 4.5
-0.1
-0.2
-0.1
-0.1
-0.7
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
-0.2
-0.0
-0.0
-0.8
no stress control
no stress control
+0.2
+0.1
+0.1
-0.2
-0.8
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
-0.2
+0.2
-0.4
-0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
-0.1
+0.2
+0.0
-0.5
pH
R2A_PIPES pH 4.5
+0.1
-0.0
+0.1
-0.1
-0.4
stress
R2A with Zinc chloride 2560 uM
+0.1
-0.2
+0.0
-0.0
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
+0.2
-0.0
-0.2
-0.1
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.0
+0.1
+0.2
-0.4
no stress control
no stress control
+0.2
+0.1
+0.1
+0.2
-0.4
stress
R2A with Zinc chloride 2560 uM
+0.2
+0.2
-0.1
+0.1
-0.1
no stress control
no stress control
-0.0
+0.0
+0.1
+0.4
-0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.0
-0.0
+0.0
+0.4
+0.0
no stress control
no stress control
+0.0
+0.1
+0.2
+0.5
-0.2
pH
R2A_PIPES pH 4.25
+0.0
-0.1
+0.3
-0.0
+0.4
no stress control
no stress control
+0.1
+0.1
-0.2
+0.5
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
-0.0
+0.1
+0.3
+0.3
no stress control
no stress control
+0.0
+0.2
+0.0
+0.1
+0.5
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.0
+0.3
+0.5
+0.6
-0.6
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.0
-0.0
-0.1
+0.1
+0.8
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
+0.1
+0.2
+0.6
+0.0
no stress control
no stress control
+0.1
+0.1
+0.1
+0.5
+0.7
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