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Cofit
Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS08940 and LRK55_RS08945 are separated by 181 nucleotides
LRK55_RS08945 and LRK55_RS08950 are separated by 438 nucleotides
LRK55_RS08950 and LRK55_RS08955 are separated by 38 nucleotides
LRK55_RS08955 and LRK55_RS08960 overlap by 4 nucleotides
LRK55_RS08940: LRK55_RS08940 - carboxymuconolactone decarboxylase family protein, at 1,960,571 to 1,961,113
_RS08940
LRK55_RS08945: LRK55_RS08945 - gamma-glutamyl-gamma-aminobutyrate hydrolase family protein, at 1,961,295 to 1,962,017
_RS08945
LRK55_RS08950: LRK55_RS08950 - aminomethyl-transferring glycine dehydrogenase, at 1,962,456 to 1,965,314
_RS08950
LRK55_RS08955: LRK55_RS08955 - YggS family pyridoxal phosphate-dependent enzyme, at 1,965,353 to 1,966,177
_RS08955
LRK55_RS08960: LRK55_RS08960 - pyridoxine/pyridoxal/pyridoxamine kinase, at 1,966,174 to 1,967,037
_RS08960
Group
Condition
LRK55
_RS08940
LRK55
_RS08945
LRK55
_RS08950
LRK55
_RS08955
LRK55
_RS08960
pH
R2A_PIPES pH 4.25
-1.1
+0.1
-0.0
-0.4
+0.0
stress
R2A with Nickel (II) chloride 1696 uM
-0.3
-0.1
-0.2
-0.1
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.0
-0.3
+0.0
-0.1
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.2
-0.2
+0.0
-0.1
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
-0.1
-0.0
-0.1
+0.0
pH
R2A_PIPES pH 4.5
-0.1
+0.0
-0.0
+0.0
-0.1
no stress control
no stress control
-0.1
+0.0
-0.0
+0.1
-0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
-0.1
+0.0
+0.1
+0.1
no stress control
no stress control
-0.3
+0.2
+0.0
+0.1
+0.1
stress
R2A with Zinc chloride 2560 uM
+0.4
-0.3
-0.0
-0.0
+0.1
no stress control
no stress control
-0.2
+0.0
+0.0
+0.3
+0.0
no stress control
no stress control
+0.1
+0.1
+0.1
-0.1
+0.2
no stress control
no stress control
-0.2
+0.3
+0.0
+0.2
+0.1
pH
R2A_PIPES pH 4.5
-0.2
+0.4
+0.1
+0.1
+0.1
stress
R2A with Zinc chloride 2560 uM
+0.0
-0.0
+0.2
+0.2
+0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.1
+0.5
-0.0
+0.2
+0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.0
+0.6
+0.0
+0.1
+0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.3
+0.8
-0.0
+0.3
-0.0
no stress control
no stress control
+0.1
+0.1
+0.2
+0.1
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.3
+0.5
-0.1
+0.2
-0.0
pH
R2A_PIPES pH 4.25
-0.2
+0.7
+0.1
+0.2
-0.0
no stress control
no stress control
+0.3
+0.4
+0.2
+0.2
+0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.5
+0.6
+0.2
+0.5
+0.1
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