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Cofit
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS08710 and LRK55_RS08715 are separated by 71 nucleotides
LRK55_RS08715 and LRK55_RS08720 are separated by 117 nucleotides
LRK55_RS08720 and LRK55_RS08725 are separated by 156 nucleotides
LRK55_RS08725 and LRK55_RS08730 overlap by 11 nucleotides
LRK55_RS08710: LRK55_RS08710 - phosphomannomutase/phosphoglucomutase, at 1,909,417 to 1,911,729
_RS08710
LRK55_RS08715: LRK55_RS08715 - DUF4124 domain-containing protein, at 1,911,801 to 1,912,442
_RS08715
LRK55_RS08720: LRK55_RS08720 - orotate phosphoribosyltransferase, at 1,912,560 to 1,913,207
_RS08720
LRK55_RS08725: LRK55_RS08725 - exodeoxyribonuclease III, at 1,913,364 to 1,914,134
_RS08725
LRK55_RS08730: LRK55_RS08730 - MFS transporter, at 1,914,124 to 1,915,437
_RS08730
Group
Condition
LRK55
_RS08710
LRK55
_RS08715
LRK55
_RS08720
LRK55
_RS08725
LRK55
_RS08730
pH
R2A_PIPES pH 4.25
-2.4
+1.0
-3.2
-0.6
-0.2
stress
R2A with Zinc chloride 2560 uM
-1.3
+0.6
-3.2
-0.1
-1.4
pH
R2A_PIPES pH 4.25
-3.1
+1.1
-2.8
+0.1
-0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
-3.3
+0.6
+0.7
-0.3
-2.3
stress
R2A_PIPES with Cadmium chloride 64 uM
-2.7
+0.7
+0.6
-0.3
-2.6
no stress control
no stress control
-0.9
+0.6
-2.8
-0.1
-0.8
stress
R2A with Zinc chloride 2560 uM
-1.2
+0.6
-2.7
-0.1
-0.7
no stress control
no stress control
-0.7
+0.6
-2.9
-0.0
-0.9
pH
R2A_PIPES pH 4.5
-1.6
+0.2
-1.3
+0.0
-1.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.7
+0.5
-2.0
-0.0
-1.4
pH
R2A_PIPES pH 4.5
-1.4
+0.2
-1.3
-0.0
-0.8
no stress control
no stress control
-0.7
+0.6
-1.9
-0.1
-1.0
no stress control
no stress control
-0.7
+0.8
-2.4
-0.0
-0.7
no stress control
no stress control
-0.5
+0.6
-2.0
-0.2
-0.8
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.8
+0.2
-1.3
-0.1
-0.7
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-2.1
+0.7
-2.5
+0.4
+0.9
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-2.7
+0.5
-2.2
+0.4
+1.6
no stress control
no stress control
-0.7
+0.4
-1.8
-0.1
+0.2
no stress control
no stress control
-0.5
+0.3
-1.7
-0.2
+0.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.8
+0.6
-1.1
-0.1
-0.3
stress
R2A with Nickel (II) chloride 1696 uM
-1.2
+0.6
-0.3
+0.0
-0.7
stress
R2A with Nickel (II) chloride 1696 uM
-0.8
+0.9
-0.3
-0.2
-0.8
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-1.1
+0.3
-0.5
+0.1
-0.0
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