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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS08700 and LRK55_RS08705 overlap by 4 nucleotides
LRK55_RS08705 and LRK55_RS08710 are separated by 58 nucleotides
LRK55_RS08710 and LRK55_RS08715 are separated by 71 nucleotides
LRK55_RS08715 and LRK55_RS08720 are separated by 117 nucleotides
LRK55_RS08700: LRK55_RS08700 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 1,907,701 to 1,908,906
_RS08700
LRK55_RS08705: LRK55_RS08705 - dUTP diphosphatase, at 1,908,903 to 1,909,358
_RS08705
LRK55_RS08710: LRK55_RS08710 - phosphomannomutase/phosphoglucomutase, at 1,909,417 to 1,911,729
_RS08710
LRK55_RS08715: LRK55_RS08715 - DUF4124 domain-containing protein, at 1,911,801 to 1,912,442
_RS08715
LRK55_RS08720: LRK55_RS08720 - orotate phosphoribosyltransferase, at 1,912,560 to 1,913,207
_RS08720
Group
Condition
LRK55
_RS08700
LRK55
_RS08705
LRK55
_RS08710
LRK55
_RS08715
LRK55
_RS08720
pH
R2A_PIPES pH 4.25
-0.6
-3.3
-2.4
+1.0
-3.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-1.2
-2.4
-2.7
+0.5
-2.2
pH
R2A_PIPES pH 4.25
-0.8
-2.3
-3.1
+1.1
-2.8
stress
R2A with Zinc chloride 2560 uM
-2.5
-1.5
-1.3
+0.6
-3.2
no stress control
no stress control
-2.3
-1.7
-0.9
+0.6
-2.8
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-1.5
-1.5
-2.1
+0.7
-2.5
no stress control
no stress control
-1.6
-2.2
-0.7
+0.6
-2.9
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.9
-3.6
-0.8
+0.2
-1.3
stress
R2A with Zinc chloride 2560 uM
-1.6
-1.3
-1.2
+0.6
-2.7
no stress control
no stress control
-2.4
-1.7
-0.7
+0.6
-1.9
no stress control
no stress control
-2.2
-1.9
-0.5
+0.6
-2.0
no stress control
no stress control
-2.0
-1.6
-0.7
+0.8
-2.4
pH
R2A_PIPES pH 4.5
-1.1
-1.9
-1.6
+0.2
-1.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.9
-2.5
-0.7
+0.5
-2.0
no stress control
no stress control
-2.3
-1.2
-0.5
+0.3
-1.7
no stress control
no stress control
-2.1
-0.7
-0.7
+0.4
-1.8
stress
R2A with Nickel (II) chloride 1696 uM
-2.6
-1.2
-1.2
+0.6
-0.3
stress
R2A with Nickel (II) chloride 1696 uM
-2.2
-1.8
-0.8
+0.9
-0.3
pH
R2A_PIPES pH 4.5
-0.7
-0.7
-1.4
+0.2
-1.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-1.2
-1.1
-0.8
+0.6
-1.1
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.6
-1.2
-3.3
+0.6
+0.7
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.3
-1.2
-2.7
+0.7
+0.6
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
-0.7
-1.1
+0.3
-0.5
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