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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS08620 and LRK55_RS08625 are separated by 98 nucleotides
LRK55_RS08625 and LRK55_RS08630 are separated by 116 nucleotides
LRK55_RS08630 and LRK55_RS08635 are separated by 52 nucleotides
LRK55_RS08635 and LRK55_RS08640 are separated by 210 nucleotides
LRK55_RS08620: LRK55_RS08620 - GGDEF and EAL domain-containing protein, at 1,888,605 to 1,891,079
_RS08620
LRK55_RS08625: LRK55_RS08625 - hypothetical protein, at 1,891,178 to 1,892,320
_RS08625
LRK55_RS08630: LRK55_RS08630 - acetyl-CoA C-acetyltransferase, at 1,892,437 to 1,893,720
_RS08630
LRK55_RS08635: LRK55_RS08635 - energy transducer TonB, at 1,893,773 to 1,894,324
_RS08635
LRK55_RS08640: LRK55_RS08640 - phospholipase D family protein, at 1,894,535 to 1,896,412
_RS08640
Group
Condition
LRK55
_RS08620
LRK55
_RS08625
LRK55
_RS08630
LRK55
_RS08635
LRK55
_RS08640
pH
R2A_PIPES pH 4.5
+0.1
-0.3
-0.4
-0.4
-5.0
pH
R2A_PIPES pH 4.25
+0.3
+0.7
-0.1
+0.1
-5.0
pH
R2A_PIPES pH 4.25
+0.2
+0.4
-0.6
+0.6
-4.2
pH
R2A_PIPES pH 4.5
+0.3
-0.1
+0.0
+0.5
-4.4
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.3
+0.3
+0.4
-0.0
-3.9
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
+0.5
+0.7
-0.2
-3.8
no stress control
no stress control
-0.1
-0.2
-0.5
+0.0
-0.9
no stress control
no stress control
-0.1
-0.1
-0.3
-0.3
-0.7
no stress control
no stress control
-0.1
+0.0
-0.2
-0.0
-1.0
stress
R2A with Zinc chloride 2560 uM
+0.1
-0.0
+0.0
+0.1
-1.1
stress
R2A with Zinc chloride 2560 uM
+0.2
-0.2
+0.2
+0.1
-1.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.4
+0.5
+0.1
-0.3
-1.4
no stress control
no stress control
+0.3
+0.1
-0.3
-0.2
-0.6
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.1
+0.1
+0.1
-0.1
-0.7
stress
R2A with Nickel (II) chloride 1696 uM
+0.2
+0.3
-0.1
-0.6
-0.4
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.2
+0.5
+0.3
+0.1
-1.7
no stress control
no stress control
-0.0
+0.0
-0.4
+0.5
-0.5
no stress control
no stress control
+0.1
+0.1
-0.2
+0.2
-0.7
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
+0.8
-0.3
-0.2
-0.6
stress
R2A with Nickel (II) chloride 1696 uM
+0.3
+0.2
-0.5
-0.0
-0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
+0.8
-0.1
-0.3
-0.7
no stress control
no stress control
+0.1
+0.1
+0.1
+0.3
-0.6
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
+0.3
+0.0
+0.4
-0.9
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