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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS08425 and LRK55_RS08430 are separated by 133 nucleotides
LRK55_RS08430 and LRK55_RS08435 are separated by 168 nucleotides
LRK55_RS08435 and LRK55_RS08440 are separated by 410 nucleotides
LRK55_RS08440 and LRK55_RS08445 are separated by 150 nucleotides
LRK55_RS08425: LRK55_RS08425 - glucoamylase family protein, at 1,839,920 to 1,841,383
_RS08425
LRK55_RS08430: LRK55_RS08430 - TonB-dependent receptor, at 1,841,517 to 1,844,327
_RS08430
LRK55_RS08435: LRK55_RS08435 - LacI family DNA-binding transcriptional regulator, at 1,844,496 to 1,845,506
_RS08435
LRK55_RS08440: LRK55_RS08440 - SPFH domain-containing protein, at 1,845,917 to 1,846,366
_RS08440
LRK55_RS08445: LRK55_RS08445 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 1,846,517 to 1,847,146
_RS08445
Group
Condition
LRK55
_RS08425
LRK55
_RS08430
LRK55
_RS08435
LRK55
_RS08440
LRK55
_RS08445
pH
R2A_PIPES pH 4.25
-0.3
-0.0
-0.9
-0.9
+0.1
pH
R2A_PIPES pH 4.25
+0.2
+0.2
-0.6
-1.0
-0.3
stress
R2A with Zinc chloride 2560 uM
-0.1
-0.1
-0.6
-0.1
-0.5
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
-0.0
-0.3
-0.0
-0.6
stress
R2A with Zinc chloride 2560 uM
+0.0
-0.1
-0.5
-0.2
-0.0
no stress control
no stress control
-0.0
+0.0
-0.4
-0.1
-0.2
no stress control
no stress control
+0.1
-0.0
-0.4
-0.2
-0.1
no stress control
no stress control
-0.0
-0.0
-0.5
+0.1
+0.0
pH
R2A_PIPES pH 4.5
+0.0
+0.1
-0.7
+0.2
-0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.0
+0.1
-0.6
+0.4
-0.3
no stress control
no stress control
+0.0
+0.1
-0.2
-0.0
-0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
+0.2
-0.2
-0.3
-0.2
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.2
-0.4
+0.3
-0.5
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.2
+0.2
-0.2
-0.1
-0.4
stress
R2A with Nickel (II) chloride 1696 uM
-0.0
+0.1
-0.5
+0.1
-0.0
no stress control
no stress control
+0.0
+0.0
-0.3
-0.0
+0.0
no stress control
no stress control
+0.2
+0.1
-0.4
+0.0
-0.1
no stress control
no stress control
-0.0
+0.1
-0.2
+0.0
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
+0.0
-0.4
-0.0
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
+0.2
-0.5
+0.2
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
+0.1
-0.2
+0.4
-0.4
pH
R2A_PIPES pH 4.5
+0.2
+0.2
-0.6
+0.1
+0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.0
+0.0
-0.3
+0.0
+0.5
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