Fitness for 5 genes in Rhodanobacter denitrificans MT42

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Top 23 experiments (either direction), sorted by average fitness

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500 ntLRK55_RS08350 and LRK55_RS08355 are separated by 21 nucleotidesLRK55_RS08355 and LRK55_RS08360 are separated by 113 nucleotidesLRK55_RS08360 and LRK55_RS08365 overlap by 4 nucleotidesLRK55_RS08365 and LRK55_RS08370 are separated by 112 nucleotides LRK55_RS08350: LRK55_RS08350 - RimK family alpha-L-glutamate ligase, at 1,826,723 to 1,828,210 _RS08350 LRK55_RS08355: LRK55_RS08355 - hypothetical protein, at 1,828,232 to 1,828,489 _RS08355 LRK55_RS08360: LRK55_RS08360 - shikimate dehydrogenase, at 1,828,603 to 1,829,433 _RS08360 LRK55_RS08365: LRK55_RS08365 - YkgJ family cysteine cluster protein, at 1,829,430 to 1,829,696 _RS08365 LRK55_RS08370: LRK55_RS08370 - hypothetical protein, at 1,829,809 to 1,830,360 _RS08370
Group Condition LRK55_RS08350 LRK55_RS08355 LRK55_RS08360 LRK55_RS08365 LRK55_RS08370
stress R2A with Zinc chloride 2560 uM -2.5 N.D. -1.8 N.D. +0.1
stress R2A with Zinc chloride 2560 uM -2.3 N.D. -1.7 N.D. -0.2
pH R2A_PIPES pH 4.25 -2.2 N.D. -1.9 N.D. +0.0
stress R2A_PIPES with Cadmium chloride 64 uM -2.6 N.D. -1.3 N.D. +0.2
stress R2A_PIPES with Cadmium chloride 64 uM -2.1 N.D. -1.0 N.D. +0.3
pH R2A_PIPES pH 4.25 -1.8 N.D. -0.7 N.D. -0.3
stress R2A_PIPES with Aluminum chloride 0.140625 mM -0.9 N.D. -1.6 N.D. +0.0
no stress control no stress control -0.8 N.D. -1.6 N.D. -0.0
stress R2A with Nickel (II) chloride 1696 uM -0.9 N.D. -1.6 N.D. +0.2
no stress control no stress control -0.9 N.D. -1.3 N.D. -0.1
pH R2A_PIPES pH 4.5 -0.8 N.D. -1.6 N.D. +0.2
stress R2A with Nickel (II) chloride 1696 uM -1.1 N.D. -1.3 N.D. +0.2
no stress control no stress control -0.9 N.D. -1.3 N.D. -0.0
no stress control no stress control -0.8 N.D. -1.2 N.D. -0.1
stress R2A_PIPES with Aluminum chloride 0.140625 mM -0.7 N.D. -1.6 N.D. +0.2
stress R2A with Metal_ion_mix_sitestressplate 2 x -0.8 N.D. -1.4 N.D. +0.1
no stress control no stress control -0.9 N.D. -1.2 N.D. +0.3
no stress control no stress control -0.9 N.D. -1.1 N.D. +0.2
pH R2A_PIPES pH 4.5 -0.7 N.D. -1.4 N.D. +0.3
stress R2A with Metal_ion_mix_sitestressplate 2 x -0.8 N.D. -1.0 N.D. +0.1
no stress control no stress control -0.7 N.D. -1.1 N.D. +0.2
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM +0.2 N.D. -1.3 N.D. +0.1
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM +0.6 N.D. -1.3 N.D. +0.0
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