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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS08330 and LRK55_RS08335 are separated by 28 nucleotides
LRK55_RS08335 and LRK55_RS08340 overlap by 1 nucleotides
LRK55_RS08340 and LRK55_RS08345 are separated by 235 nucleotides
LRK55_RS08345 and LRK55_RS08350 are separated by 191 nucleotides
LRK55_RS08330: LRK55_RS08330 - hydroxymethylglutaryl-CoA reductase, degradative, at 1,821,380 to 1,823,722
_RS08330
LRK55_RS08335: LRK55_RS08335 - hypothetical protein, at 1,823,751 to 1,824,770
_RS08335
LRK55_RS08340: LRK55_RS08340 - diphosphomevalonate decarboxylase, at 1,824,770 to 1,825,762
_RS08340
LRK55_RS08345: LRK55_RS08345 - GNAT family N-acetyltransferase, at 1,825,998 to 1,826,531
_RS08345
LRK55_RS08350: LRK55_RS08350 - RimK family alpha-L-glutamate ligase, at 1,826,723 to 1,828,210
_RS08350
Group
Condition
LRK55
_RS08330
LRK55
_RS08335
LRK55
_RS08340
LRK55
_RS08345
LRK55
_RS08350
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.0
-0.1
-0.5
-3.6
-2.1
pH
R2A_PIPES pH 4.25
+0.5
-0.1
-1.4
-3.4
-1.8
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.0
+0.0
+0.2
-3.5
-2.6
stress
R2A with Zinc chloride 2560 uM
+0.2
+0.2
+0.3
-4.0
-2.3
stress
R2A with Zinc chloride 2560 uM
+0.0
+0.2
+0.3
-3.3
-2.5
pH
R2A_PIPES pH 4.25
+0.3
+0.1
+0.3
-3.5
-2.2
no stress control
no stress control
-0.2
-0.0
-0.1
-3.9
-0.8
pH
R2A_PIPES pH 4.5
+0.2
-0.0
-0.2
-4.1
-0.8
no stress control
no stress control
-0.0
+0.0
-0.1
-4.0
-0.8
no stress control
no stress control
+0.1
-0.2
+0.2
-4.0
-0.9
stress
R2A with Nickel (II) chloride 1696 uM
+0.3
+0.1
-0.2
-3.9
-0.9
no stress control
no stress control
+0.1
+0.0
+0.1
-3.9
-0.9
no stress control
no stress control
+0.0
-0.0
+0.3
-3.8
-0.9
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.2
+0.2
-0.2
-3.7
-0.8
no stress control
no stress control
+0.2
+0.1
+0.3
-3.8
-0.9
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
+0.2
+0.1
-3.5
-0.9
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
+0.3
+0.0
-3.8
-0.7
stress
R2A with Nickel (II) chloride 1696 uM
+0.3
+0.3
+0.5
-4.1
-1.1
no stress control
no stress control
+0.1
+0.1
-0.0
-3.5
-0.7
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.0
+0.2
+0.5
-3.7
-0.8
pH
R2A_PIPES pH 4.5
+0.4
+0.3
+0.3
-4.0
-0.7
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
-0.3
-0.1
-3.4
+0.6
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
-0.2
+0.2
-3.5
+0.2
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