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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS08170 and LRK55_RS08175 are separated by 75 nucleotides
LRK55_RS08175 and LRK55_RS08180 are separated by 158 nucleotides
LRK55_RS08180 and LRK55_RS08185 are separated by 221 nucleotides
LRK55_RS08185 and LRK55_RS08190 are separated by 97 nucleotides
LRK55_RS08170: LRK55_RS08170 - GlsB/YeaQ/YmgE family stress response membrane protein, at 1,786,090 to 1,786,467
_RS08170
LRK55_RS08175: LRK55_RS08175 - MFS transporter, at 1,786,543 to 1,788,213
_RS08175
LRK55_RS08180: LRK55_RS08180 - carbohydrate porin, at 1,788,372 to 1,789,748
_RS08180
LRK55_RS08185: LRK55_RS08185 - acetate--CoA ligase, at 1,789,970 to 1,791,910
_RS08185
LRK55_RS08190: LRK55_RS08190 - response regulator transcription factor, at 1,792,008 to 1,792,682
_RS08190
Group
Condition
LRK55
_RS08170
LRK55
_RS08175
LRK55
_RS08180
LRK55
_RS08185
LRK55
_RS08190
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.0
+0.1
-0.2
+0.1
-0.1
no stress control
no stress control
-0.2
+0.1
-0.1
+0.2
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
+0.2
+0.0
+0.1
-0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
+0.1
-0.2
+0.2
+0.2
no stress control
no stress control
-0.2
+0.1
+0.1
+0.1
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
+0.1
-0.1
+0.2
+0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.3
+0.1
+0.0
+0.2
+0.2
no stress control
no stress control
-0.0
+0.1
+0.0
+0.2
+0.0
stress
R2A with Nickel (II) chloride 1696 uM
-0.0
+0.0
-0.2
+0.3
+0.2
no stress control
no stress control
+0.1
+0.1
+0.1
+0.1
-0.2
no stress control
no stress control
+0.0
+0.0
+0.0
+0.2
+0.2
stress
R2A with Nickel (II) chloride 1696 uM
-0.0
+0.1
-0.1
+0.3
+0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
-0.0
+0.4
+0.1
+0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.0
+0.1
-0.0
+0.3
+0.2
pH
R2A_PIPES pH 4.5
-0.2
+0.1
+0.1
+0.3
+0.3
stress
R2A with Zinc chloride 2560 uM
+0.3
+0.0
-0.1
+0.3
+0.1
no stress control
no stress control
+0.3
+0.0
+0.0
+0.1
+0.3
no stress control
no stress control
-0.0
+0.2
+0.1
+0.3
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.2
-0.0
+0.3
+0.1
+0.3
pH
R2A_PIPES pH 4.5
+0.2
+0.1
+0.1
+0.3
+0.2
stress
R2A with Zinc chloride 2560 uM
+0.3
+0.1
-0.1
+0.4
+0.5
pH
R2A_PIPES pH 4.25
+0.2
+0.2
+0.4
+0.4
+0.7
pH
R2A_PIPES pH 4.25
+0.2
+0.1
+0.1
+0.6
+1.0
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