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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS08130 and LRK55_RS08135 are separated by 76 nucleotides
LRK55_RS08135 and LRK55_RS08140 are separated by 83 nucleotides
LRK55_RS08140 and LRK55_RS08145 are separated by 105 nucleotides
LRK55_RS08145 and LRK55_RS08150 are separated by 74 nucleotides
LRK55_RS08130: LRK55_RS08130 - class 1 fructose-bisphosphatase, at 1,777,492 to 1,778,523
_RS08130
LRK55_RS08135: LRK55_RS08135 - patatin-like phospholipase family protein, at 1,778,600 to 1,779,508
_RS08135
LRK55_RS08140: LRK55_RS08140 - S9 family peptidase, at 1,779,592 to 1,781,649
_RS08140
LRK55_RS08145: LRK55_RS08145 - type II toxin-antitoxin system HipA family toxin YjjJ, at 1,781,755 to 1,783,128
_RS08145
LRK55_RS08150: LRK55_RS08150 - GntR family transcriptional regulator, at 1,783,203 to 1,783,586
_RS08150
Group
Condition
LRK55
_RS08130
LRK55
_RS08135
LRK55
_RS08140
LRK55
_RS08145
LRK55
_RS08150
pH
R2A_PIPES pH 4.25
-0.3
-0.6
-0.2
-0.4
+0.3
stress
R2A with Zinc chloride 2560 uM
+0.3
+0.1
-0.1
-0.2
-0.6
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.2
-0.3
+0.2
-0.1
-0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
-0.1
+0.1
-0.1
+0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
+0.1
+0.0
-0.2
-0.0
pH
R2A_PIPES pH 4.5
+0.1
+0.1
+0.0
-0.2
-0.2
no stress control
no stress control
-0.1
-0.1
-0.0
+0.2
+0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.0
-0.0
-0.1
-0.0
+0.2
no stress control
no stress control
+0.0
+0.1
+0.0
+0.0
-0.0
no stress control
no stress control
-0.1
-0.2
+0.0
+0.2
+0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.3
+0.2
-0.0
+0.2
-0.4
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
-0.1
-0.0
-0.2
+0.6
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
-0.1
+0.0
+0.3
+0.4
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
+0.2
+0.1
-0.4
+0.5
no stress control
no stress control
-0.0
+0.1
+0.0
+0.0
+0.4
no stress control
no stress control
-0.1
-0.1
+0.1
+0.4
+0.2
no stress control
no stress control
+0.0
+0.1
+0.2
+0.3
+0.1
pH
R2A_PIPES pH 4.5
+0.1
+0.1
+0.0
+0.4
+0.1
stress
R2A with Zinc chloride 2560 uM
-0.1
-0.0
+0.0
+0.2
+0.8
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.2
-0.0
+0.0
+0.6
pH
R2A_PIPES pH 4.25
-0.0
+0.0
-0.2
+0.6
+0.4
no stress control
no stress control
+0.0
+0.0
-0.0
+0.4
+0.5
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.2
-0.0
+0.6
+0.4
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