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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS07960 and LRK55_RS07965 are separated by 28 nucleotides
LRK55_RS07965 and LRK55_RS07970 are separated by 32 nucleotides
LRK55_RS07970 and LRK55_RS07975 overlap by 4 nucleotides
LRK55_RS07975 and LRK55_RS07980 are separated by 191 nucleotides
LRK55_RS07960: LRK55_RS07960 - hypothetical protein, at 1,749,047 to 1,749,565
_RS07960
LRK55_RS07965: LRK55_RS07965 - hypothetical protein, at 1,749,594 to 1,750,631
_RS07965
LRK55_RS07970: LRK55_RS07970 - cupin domain-containing protein, at 1,750,664 to 1,751,044
_RS07970
LRK55_RS07975: LRK55_RS07975 - hypothetical protein, at 1,751,041 to 1,751,343
_RS07975
LRK55_RS07980: LRK55_RS07980 - AI-2E family transporter, at 1,751,535 to 1,752,725
_RS07980
Group
Condition
LRK55
_RS07960
LRK55
_RS07965
LRK55
_RS07970
LRK55
_RS07975
LRK55
_RS07980
pH
R2A_PIPES pH 4.25
+0.0
-0.1
-0.4
+0.3
-2.3
pH
R2A_PIPES pH 4.25
-0.1
+0.3
+0.4
-0.0
-1.9
pH
R2A_PIPES pH 4.5
+0.0
+0.0
-0.0
-0.3
-0.4
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
-0.0
+0.0
-0.2
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.0
-0.1
+0.0
-0.4
-0.0
stress
R2A with Zinc chloride 2560 uM
+0.1
-0.1
-0.3
+0.1
-0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
-0.1
-0.4
-0.0
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
-0.1
+0.0
-0.1
-0.1
stress
R2A with Zinc chloride 2560 uM
+0.2
+0.1
-0.1
-0.2
-0.0
no stress control
no stress control
+0.1
+0.1
+0.0
-0.1
-0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.2
+0.0
-0.2
+0.1
-0.2
no stress control
no stress control
+0.1
+0.1
-0.2
+0.0
-0.0
pH
R2A_PIPES pH 4.5
+0.1
+0.0
+0.2
+0.1
-0.4
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.0
-0.0
+0.1
+0.0
+0.0
no stress control
no stress control
+0.1
-0.1
-0.1
+0.1
+0.1
no stress control
no stress control
+0.1
+0.0
-0.0
-0.1
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
+0.1
-0.1
-0.1
+0.2
no stress control
no stress control
-0.0
+0.2
+0.1
-0.1
+0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
+0.2
+0.2
-0.2
+0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
-0.0
+0.2
-0.0
+0.0
no stress control
no stress control
+0.3
+0.3
+0.0
-0.1
-0.1
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
+0.2
+0.0
-0.1
+0.2
no stress control
no stress control
+0.2
+0.2
+0.4
-0.1
-0.0
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LRK55_RS07970
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