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Cofit
Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS07890 and LRK55_RS07895 are separated by 134 nucleotides
LRK55_RS07895 and LRK55_RS07900 overlap by 4 nucleotides
LRK55_RS07900 and LRK55_RS07905 are separated by 27 nucleotides
LRK55_RS07905 and LRK55_RS07910 are separated by 279 nucleotides
LRK55_RS07890: LRK55_RS07890 - efflux RND transporter permease subunit, at 1,736,644 to 1,739,835
_RS07890
LRK55_RS07895: LRK55_RS07895 - TolC family protein, at 1,739,970 to 1,741,412
_RS07895
LRK55_RS07900: LRK55_RS07900 - SDR family NAD(P)-dependent oxidoreductase, at 1,741,409 to 1,742,143
_RS07900
LRK55_RS07905: LRK55_RS07905 - nuclear transport factor 2 family protein, at 1,742,171 to 1,742,614
_RS07905
LRK55_RS07910: LRK55_RS07910 - cyclase family protein, at 1,742,894 to 1,743,817
_RS07910
Group
Condition
LRK55
_RS07890
LRK55
_RS07895
LRK55
_RS07900
LRK55
_RS07905
LRK55
_RS07910
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.6
-0.5
+0.1
-0.3
+0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.6
-0.5
+0.1
-0.2
-0.2
no stress control
no stress control
-0.2
-0.4
-0.0
+0.0
-0.2
no stress control
no stress control
-0.2
-0.1
+0.0
-0.3
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
-0.1
+0.3
-0.4
-0.3
no stress control
no stress control
-0.2
-0.6
+0.1
+0.0
+0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.3
-0.3
+0.0
-0.1
+0.1
pH
R2A_PIPES pH 4.5
-0.8
-0.0
+0.0
+0.1
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.6
-0.4
-0.1
+0.4
+0.2
no stress control
no stress control
-0.2
-0.3
+0.1
+0.1
-0.0
stress
R2A with Nickel (II) chloride 1696 uM
-0.2
-0.1
-0.0
-0.3
+0.3
pH
R2A_PIPES pH 4.5
-0.5
-0.2
-0.1
+0.2
+0.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
+0.0
-0.2
+0.1
-0.1
no stress control
no stress control
-0.2
-0.1
+0.0
+0.1
+0.0
pH
R2A_PIPES pH 4.25
-0.9
-0.3
+0.7
+0.4
-0.1
pH
R2A_PIPES pH 4.25
-0.8
+0.1
-0.1
+0.5
+0.3
no stress control
no stress control
-0.3
-0.1
+0.0
+0.3
+0.1
stress
R2A with Zinc chloride 2560 uM
+0.3
-0.0
+0.1
-0.4
+0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.3
-0.1
-0.1
+0.6
-0.1
stress
R2A with Zinc chloride 2560 uM
+0.4
+0.4
-0.2
-0.2
-0.2
no stress control
no stress control
-0.1
+0.1
+0.1
+0.9
-0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
+1.0
+0.5
-0.6
-0.2
+0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
+1.4
+0.7
+0.1
+0.3
+0.2
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