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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS07705 and LRK55_RS07710 are separated by 1 nucleotides
LRK55_RS07710 and LRK55_RS07715 are separated by 743 nucleotides
LRK55_RS07715 and LRK55_RS07720 are separated by 34 nucleotides
LRK55_RS07720 and LRK55_RS07725 are separated by 178 nucleotides
LRK55_RS07705: LRK55_RS07705 - DUF2945 domain-containing protein, at 1,694,579 to 1,694,791
_RS07705
LRK55_RS07710: LRK55_RS07710 - DUF488 domain-containing protein, at 1,694,793 to 1,695,338
_RS07710
LRK55_RS07715: LRK55_RS07715 - decarboxylating 6-phosphogluconate dehydrogenase, at 1,696,082 to 1,696,987
_RS07715
LRK55_RS07720: LRK55_RS07720 - glucoamylase family protein, at 1,697,022 to 1,698,356
_RS07720
LRK55_RS07725: LRK55_RS07725 - glycosyl transferase family 36, at 1,698,535 to 1,702,422
_RS07725
Group
Condition
LRK55
_RS07705
LRK55
_RS07710
LRK55
_RS07715
LRK55
_RS07720
LRK55
_RS07725
pH
R2A_PIPES pH 4.25
-0.3
-1.1
-1.5
-0.3
-0.0
pH
R2A_PIPES pH 4.25
-0.5
-0.2
-1.8
-0.2
+0.3
no stress control
no stress control
-0.7
-1.4
-0.1
+0.1
-0.0
stress
R2A with Zinc chloride 2560 uM
-0.6
-1.4
-0.1
-0.1
+0.3
pH
R2A_PIPES pH 4.5
-0.4
+0.4
-0.5
-0.1
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.3
-0.9
+0.0
+0.1
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.7
-0.1
+0.1
+0.2
-0.0
stress
R2A with Zinc chloride 2560 uM
-0.3
+0.0
-0.0
-0.0
-0.1
pH
R2A_PIPES pH 4.5
+0.1
+0.5
-0.6
-0.3
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.9
+0.7
+0.0
-0.0
-0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
-0.2
+0.0
+0.1
-0.1
no stress control
no stress control
-0.5
+0.4
+0.0
+0.0
-0.2
no stress control
no stress control
-0.3
+0.2
+0.1
-0.1
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.4
+0.4
+0.2
-0.1
-0.0
no stress control
no stress control
-0.1
+0.2
-0.0
+0.1
-0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.3
-0.0
+0.1
-0.1
-0.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
+0.4
+0.2
-0.3
-0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.4
+0.4
-0.1
+0.2
+0.0
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
+0.3
+0.2
-0.2
+0.0
no stress control
no stress control
+0.3
-0.0
-0.1
+0.0
-0.0
no stress control
no stress control
-0.2
+0.3
+0.2
+0.0
+0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.2
+0.3
+0.1
-0.0
-0.1
no stress control
no stress control
-0.4
+0.7
+0.5
-0.1
+0.1
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