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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS07620 and LRK55_RS07625 are separated by 60 nucleotides
LRK55_RS07625 and LRK55_RS07630 are separated by 55 nucleotides
LRK55_RS07630 and LRK55_RS07635 are separated by 161 nucleotides
LRK55_RS07635 and LRK55_RS07640 are separated by 10 nucleotides
LRK55_RS07620: LRK55_RS07620 - TlpA disulfide reductase family protein, at 1,678,598 to 1,679,416
_RS07620
LRK55_RS07625: LRK55_RS07625 - RNA polymerase sigma factor, at 1,679,477 to 1,680,181
_RS07625
LRK55_RS07630: LRK55_RS07630 - GTP cyclohydrolase I, at 1,680,237 to 1,680,860
_RS07630
LRK55_RS07635: LRK55_RS07635 - DUF4142 domain-containing protein, at 1,681,022 to 1,681,552
_RS07635
LRK55_RS07640: LRK55_RS07640 - cupredoxin domain-containing protein, at 1,681,563 to 1,681,901
_RS07640
Group
Condition
LRK55
_RS07620
LRK55
_RS07625
LRK55
_RS07630
LRK55
_RS07635
LRK55
_RS07640
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
-0.3
-0.5
-0.7
N.D.
pH
R2A_PIPES pH 4.25
-0.2
-0.2
+0.3
-1.0
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
+0.0
-0.4
-0.5
N.D.
no stress control
no stress control
+0.2
-0.4
-0.1
-0.5
N.D.
no stress control
no stress control
-0.0
+0.0
-0.2
-0.2
N.D.
no stress control
no stress control
-0.2
-0.1
-0.2
+0.0
N.D.
pH
R2A_PIPES pH 4.5
-0.0
+0.0
+0.0
-0.3
N.D.
no stress control
no stress control
+0.1
+0.1
-0.5
-0.1
N.D.
no stress control
no stress control
+0.0
-0.1
+0.0
-0.3
N.D.
pH
R2A_PIPES pH 4.25
+0.0
+0.1
-0.1
-0.3
N.D.
pH
R2A_PIPES pH 4.5
+0.2
+0.0
+0.1
-0.4
N.D.
no stress control
no stress control
-0.2
+0.1
-0.2
+0.2
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.0
-0.1
-0.1
+0.1
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
-0.0
+0.1
+0.1
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.3
+0.2
+0.1
+0.0
N.D.
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.2
+0.1
-0.2
-0.0
N.D.
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.0
+0.0
+0.1
+0.0
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
-0.0
+0.2
-0.2
+0.1
N.D.
no stress control
no stress control
-0.1
-0.0
+0.1
+0.2
N.D.
stress
R2A with Zinc chloride 2560 uM
-0.1
-0.1
+0.1
+0.3
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
-0.1
-0.2
+0.5
N.D.
stress
R2A with Zinc chloride 2560 uM
-0.0
-0.1
+0.3
+0.0
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.1
+0.2
+0.3
+0.0
N.D.
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