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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS07505 and LRK55_RS07510 are separated by 23 nucleotides
LRK55_RS07510 and LRK55_RS07515 are separated by 9 nucleotides
LRK55_RS07515 and LRK55_RS07520 are separated by 140 nucleotides
LRK55_RS07520 and LRK55_RS07525 are separated by 59 nucleotides
LRK55_RS07505: LRK55_RS07505 - MarR family transcriptional regulator, at 1,641,586 to 1,642,044
_RS07505
LRK55_RS07510: LRK55_RS07510 - efflux transporter outer membrane subunit, at 1,642,068 to 1,643,507
_RS07510
LRK55_RS07515: LRK55_RS07515 - HlyD family efflux transporter periplasmic adaptor subunit, at 1,643,517 to 1,644,710
_RS07515
LRK55_RS07520: LRK55_RS07520 - DHA2 family efflux MFS transporter permease subunit, at 1,644,851 to 1,646,377
_RS07520
LRK55_RS07525: LRK55_RS07525 - acyloxyacyl hydrolase, at 1,646,437 to 1,646,958
_RS07525
Group
Condition
LRK55
_RS07505
LRK55
_RS07510
LRK55
_RS07515
LRK55
_RS07520
LRK55
_RS07525
no stress control
no stress control
-3.4
-0.3
-0.3
-0.4
-0.7
stress
R2A with Nickel (II) chloride 1696 uM
-3.4
-0.0
+0.0
-0.1
-0.4
no stress control
no stress control
-2.8
-0.1
-0.2
-0.2
-0.2
stress
R2A with Zinc chloride 2560 uM
-2.7
-0.1
-0.0
-0.0
-0.6
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-2.7
+0.0
-0.0
-0.2
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
-4.6
+1.2
+1.0
+0.5
-0.5
no stress control
no stress control
-1.3
-0.0
-0.3
-0.3
-0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.9
-0.4
-0.3
-0.4
-0.2
pH
R2A_PIPES pH 4.5
-1.4
-0.0
-0.1
-0.0
-0.3
no stress control
no stress control
-1.0
-0.3
-0.2
-0.3
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
-1.0
-0.3
+0.1
-0.1
-0.2
pH
R2A_PIPES pH 4.5
-0.5
-0.1
-0.4
-0.2
-0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.8
-0.1
-0.2
-0.4
+0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
-3.6
+1.3
+0.9
+1.1
-0.8
no stress control
no stress control
-0.8
-0.0
-0.0
-0.1
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.8
-0.0
+0.0
-0.1
-0.2
no stress control
no stress control
-0.5
+0.1
+0.0
-0.2
-0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.6
+0.0
+0.2
-0.1
-0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
+0.1
+0.1
-0.3
-0.1
no stress control
no stress control
+0.0
+0.0
+0.0
-0.2
-0.4
pH
R2A_PIPES pH 4.25
-1.2
-0.1
+0.1
+0.2
+0.9
stress
R2A with Zinc chloride 2560 uM
-0.1
+0.0
+0.2
-0.0
+0.0
pH
R2A_PIPES pH 4.25
-0.6
-0.1
+0.0
+0.2
+1.2
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