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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS07485 and LRK55_RS07490 overlap by 8 nucleotides
LRK55_RS07490 and LRK55_RS07495 are separated by 31 nucleotides
LRK55_RS07495 and LRK55_RS07500 are separated by 241 nucleotides
LRK55_RS07500 and LRK55_RS07505 are separated by 75 nucleotides
LRK55_RS07485: LRK55_RS07485 - efflux RND transporter periplasmic adaptor subunit, at 1,635,775 to 1,636,884
_RS07485
LRK55_RS07490: LRK55_RS07490 - efflux RND transporter permease subunit, at 1,636,877 to 1,640,119
_RS07490
LRK55_RS07495: LRK55_RS07495 - helix-turn-helix transcriptional regulator, at 1,640,151 to 1,641,014
_RS07495
LRK55_RS07500: LRK55_RS07500 - hypothetical protein, at 1,641,256 to 1,641,510
_RS07500
LRK55_RS07505: LRK55_RS07505 - MarR family transcriptional regulator, at 1,641,586 to 1,642,044
_RS07505
Group
Condition
LRK55
_RS07485
LRK55
_RS07490
LRK55
_RS07495
LRK55
_RS07500
LRK55
_RS07505
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.3
-0.2
-0.1
N.D.
-4.6
no stress control
no stress control
-0.2
-0.3
-0.2
N.D.
-3.4
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.2
-0.3
+0.2
N.D.
-3.6
stress
R2A with Zinc chloride 2560 uM
-0.2
-0.2
-0.4
N.D.
-2.7
no stress control
no stress control
-0.4
-0.1
-0.0
N.D.
-2.8
stress
R2A with Nickel (II) chloride 1696 uM
+0.1
-0.0
+0.1
N.D.
-3.4
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
+0.0
+0.1
N.D.
-2.7
pH
R2A_PIPES pH 4.25
-0.1
-0.1
-0.6
N.D.
-1.2
no stress control
no stress control
-0.3
-0.2
-0.2
N.D.
-1.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
-0.1
-0.1
N.D.
-0.9
no stress control
no stress control
-0.2
-0.1
+0.0
N.D.
-1.0
pH
R2A_PIPES pH 4.5
+0.1
-0.0
+0.1
N.D.
-1.4
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
+0.0
+0.0
N.D.
-1.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.3
-0.0
+0.0
N.D.
-0.8
pH
R2A_PIPES pH 4.5
-0.2
-0.0
-0.1
N.D.
-0.5
no stress control
no stress control
-0.0
-0.0
-0.1
N.D.
-0.8
pH
R2A_PIPES pH 4.25
+0.0
-0.0
-0.2
N.D.
-0.6
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
-0.0
-0.0
N.D.
-0.6
stress
R2A with Zinc chloride 2560 uM
-0.1
-0.3
-0.2
N.D.
-0.1
no stress control
no stress control
+0.0
-0.0
-0.1
N.D.
-0.5
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.0
+0.1
+0.3
N.D.
-0.8
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
-0.0
+0.1
N.D.
-0.2
no stress control
no stress control
+0.0
+0.0
-0.2
N.D.
+0.0
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