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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS07435 and LRK55_RS07440 are separated by 425 nucleotides
LRK55_RS07440 and LRK55_RS07445 are separated by 95 nucleotides
LRK55_RS07445 and LRK55_RS07450 overlap by 8 nucleotides
LRK55_RS07450 and LRK55_RS07455 are separated by 93 nucleotides
LRK55_RS07435: LRK55_RS07435 - glucokinase, at 1,625,719 to 1,626,822
_RS07435
LRK55_RS07440: LRK55_RS07440 - sugar MFS transporter, at 1,627,248 to 1,628,549
_RS07440
LRK55_RS07445: LRK55_RS07445 - LacI family DNA-binding transcriptional regulator, at 1,628,645 to 1,629,718
_RS07445
LRK55_RS07450: LRK55_RS07450 - peptidase S10, at 1,629,711 to 1,631,312
_RS07450
LRK55_RS07455: LRK55_RS07455 - hypothetical protein, at 1,631,406 to 1,632,263
_RS07455
Group
Condition
LRK55
_RS07435
LRK55
_RS07440
LRK55
_RS07445
LRK55
_RS07450
LRK55
_RS07455
stress
R2A with Zinc chloride 2560 uM
-0.1
-0.2
-0.1
-0.2
-0.9
pH
R2A_PIPES pH 4.5
-0.0
-0.1
-0.1
-0.1
-0.6
stress
R2A with Zinc chloride 2560 uM
-0.2
-0.1
-0.1
-0.1
-0.6
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.0
-0.2
-0.3
-0.3
-0.1
no stress control
no stress control
+0.0
-0.1
-0.2
-0.2
-0.4
no stress control
no stress control
+0.1
-0.2
-0.4
-0.2
-0.3
no stress control
no stress control
+0.2
-0.2
-0.2
-0.1
-0.4
stress
R2A with Nickel (II) chloride 1696 uM
+0.0
-0.0
-0.3
-0.0
-0.3
no stress control
no stress control
+0.1
-0.2
-0.1
-0.1
-0.3
no stress control
no stress control
-0.1
-0.1
-0.1
-0.0
-0.3
no stress control
no stress control
+0.0
-0.2
-0.1
-0.2
-0.2
stress
R2A with Nickel (II) chloride 1696 uM
+0.0
+0.0
-0.2
+0.0
-0.4
pH
R2A_PIPES pH 4.5
+0.0
-0.1
-0.1
-0.0
-0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.0
-0.0
-0.1
-0.1
-0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
+0.0
-0.1
-0.1
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
+0.0
+0.0
+0.0
-0.5
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.0
-0.2
-0.1
-0.3
+0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.2
-0.1
-0.1
+0.2
-0.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.0
+0.1
+0.1
-0.1
-0.3
pH
R2A_PIPES pH 4.25
+0.1
-0.1
+0.4
+0.0
-0.7
pH
R2A_PIPES pH 4.25
+0.1
+0.0
+0.3
-0.2
-0.4
no stress control
no stress control
+0.2
-0.2
+0.2
-0.1
-0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.2
-0.1
-0.0
-0.1
+0.1
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