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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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5
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS07300 and LRK55_RS07305 are separated by 200 nucleotides
LRK55_RS07305 and LRK55_RS07310 are separated by 150 nucleotides
LRK55_RS07310 and LRK55_RS07315 overlap by 4 nucleotides
LRK55_RS07315 and LRK55_RS07320 overlap by 4 nucleotides
LRK55_RS07300: LRK55_RS07300 - CsbD family protein, at 1,579,831 to 1,580,027
_RS07300
LRK55_RS07305: LRK55_RS07305 - Fic family protein, at 1,580,228 to 1,581,556
_RS07305
LRK55_RS07310: LRK55_RS07310 - monovalent cation/H(+) antiporter subunit G, at 1,581,707 to 1,582,060
_RS07310
LRK55_RS07315: LRK55_RS07315 - K+/H+ antiporter subunit F, at 1,582,057 to 1,582,338
_RS07315
LRK55_RS07320: LRK55_RS07320 - Na+/H+ antiporter subunit E, at 1,582,335 to 1,582,823
_RS07320
Group
Condition
LRK55
_RS07300
LRK55
_RS07305
LRK55
_RS07310
LRK55
_RS07315
LRK55
_RS07320
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.9
-0.0
+0.2
+0.1
-0.8
no stress control
no stress control
-0.2
-0.0
-0.4
-0.7
-0.1
no stress control
no stress control
+0.0
-0.0
+0.1
-0.4
-0.0
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.0
-0.1
-0.5
+0.0
+0.3
no stress control
no stress control
-0.2
-0.0
+0.3
+0.1
-0.3
pH
R2A_PIPES pH 4.5
+0.2
-0.1
-0.5
+0.1
+0.4
no stress control
no stress control
+0.0
-0.1
+0.0
+0.2
-0.1
no stress control
no stress control
+0.2
-0.2
+0.2
-0.1
+0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
-0.1
+0.4
+0.1
-0.0
stress
R2A with Nickel (II) chloride 1696 uM
+0.0
-0.2
+0.2
+0.2
+0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.1
-0.1
+0.4
+0.2
+0.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.4
-0.1
+0.1
+0.4
+0.0
no stress control
no stress control
+0.2
-0.2
+0.1
+0.7
-0.0
stress
R2A with Zinc chloride 2560 uM
+0.1
-0.1
-0.1
-0.1
+1.3
stress
R2A with Nickel (II) chloride 1696 uM
+0.5
-0.1
+0.2
+0.0
+0.6
no stress control
no stress control
+0.4
+0.1
-0.4
+0.8
+0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
-0.2
+0.0
+0.4
+0.9
stress
R2A with Zinc chloride 2560 uM
+0.1
-0.0
+0.5
+0.5
+0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.4
-0.1
+0.2
+0.5
+0.6
pH
R2A_PIPES pH 4.25
+0.4
-0.3
+0.2
+1.3
+0.2
pH
R2A_PIPES pH 4.5
-0.2
-0.2
+0.2
+0.9
+1.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.4
-0.3
-0.1
+0.9
+1.1
pH
R2A_PIPES pH 4.25
+0.3
-0.2
+0.5
+0.8
+1.0
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