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Cofit
Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS07230 and LRK55_RS07235 are separated by 810 nucleotides
LRK55_RS07235 and LRK55_RS07240 are separated by 257 nucleotides
LRK55_RS07240 and LRK55_RS07245 overlap by 4 nucleotides
LRK55_RS07245 and LRK55_RS07250 are separated by 34 nucleotides
LRK55_RS07230: LRK55_RS07230 - NAD(P)/FAD-dependent oxidoreductase, at 1,566,044 to 1,567,363
_RS07230
LRK55_RS07235: LRK55_RS07235 - hypothetical protein, at 1,568,174 to 1,568,350
_RS07235
LRK55_RS07240: LRK55_RS07240 - sigma-70 family RNA polymerase sigma factor, at 1,568,608 to 1,569,186
_RS07240
LRK55_RS07245: LRK55_RS07245 - ChrR family anti-sigma-E factor, at 1,569,183 to 1,569,845
_RS07245
LRK55_RS07250: LRK55_RS07250 - deoxyribodipyrimidine photo-lyase, at 1,569,880 to 1,571,292
_RS07250
Group
Condition
LRK55
_RS07230
LRK55
_RS07235
LRK55
_RS07240
LRK55
_RS07245
LRK55
_RS07250
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.3
+0.1
+0.2
-5.0
-0.0
pH
R2A_PIPES pH 4.5
-0.4
-0.2
+0.1
-4.4
+0.0
no stress control
no stress control
-0.2
+0.6
+0.2
-5.2
+0.1
stress
R2A with Zinc chloride 2560 uM
-0.2
+1.0
-0.2
-5.3
+0.1
pH
R2A_PIPES pH 4.25
-0.3
+1.0
+0.0
-4.8
+0.2
stress
R2A with Zinc chloride 2560 uM
-0.2
-0.1
+0.1
-3.5
-0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
+0.2
-0.0
-3.4
-0.0
no stress control
no stress control
-0.1
-0.8
+0.1
-2.7
+0.1
no stress control
no stress control
-0.1
+0.2
-0.0
-3.3
+0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.2
-0.2
+0.5
-3.3
+0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
+0.3
-0.1
-3.2
+0.0
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
+0.1
+0.1
-3.1
+0.3
pH
R2A_PIPES pH 4.5
+0.2
+0.7
-0.1
-3.6
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.1
+0.3
-0.2
-2.4
-0.2
no stress control
no stress control
-0.5
-0.0
+0.3
-2.3
+0.1
stress
R2A with Nickel (II) chloride 1696 uM
-0.3
+0.5
-0.1
-2.5
-0.0
no stress control
no stress control
+0.1
-0.0
+0.0
-2.2
-0.1
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
+0.3
-0.1
-2.2
+0.0
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.0
-0.1
+0.2
-2.3
+0.2
no stress control
no stress control
-0.1
-0.1
+0.1
-1.7
-0.1
pH
R2A_PIPES pH 4.25
-0.2
-0.0
+0.3
-1.8
+0.1
no stress control
no stress control
+0.0
+0.0
+0.2
-1.1
+0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
+0.3
+0.4
-1.2
+0.2
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