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Protein
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Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS07120 and LRK55_RS07125 overlap by 4 nucleotides
LRK55_RS07125 and LRK55_RS07130 are separated by 58 nucleotides
LRK55_RS07130 and LRK55_RS07135 are separated by 14 nucleotides
LRK55_RS07135 and LRK55_RS07140 are separated by 27 nucleotides
LRK55_RS07120: LRK55_RS07120 - hydantoinase B/oxoprolinase family protein, at 1,540,335 to 1,542,188
_RS07120
LRK55_RS07125: LRK55_RS07125 - hydantoinase/oxoprolinase family protein, at 1,542,185 to 1,544,260
_RS07125
LRK55_RS07130: LRK55_RS07130 - DUF1329 domain-containing protein, at 1,544,319 to 1,545,569
_RS07130
LRK55_RS07135: LRK55_RS07135 - LysR family transcriptional regulator, at 1,545,584 to 1,547,266
_RS07135
LRK55_RS07140: LRK55_RS07140 - efflux RND transporter permease subunit, at 1,547,294 to 1,549,663
_RS07140
Group
Condition
LRK55
_RS07120
LRK55
_RS07125
LRK55
_RS07130
LRK55
_RS07135
LRK55
_RS07140
pH
R2A_PIPES pH 4.5
-0.1
-0.4
-0.7
-0.8
-0.9
pH
R2A_PIPES pH 4.25
-0.4
-0.2
-0.8
-0.4
-0.6
stress
R2A with Nickel (II) chloride 1696 uM
-0.4
-0.2
-0.6
-0.6
-0.6
pH
R2A_PIPES pH 4.25
+0.0
-0.2
-0.2
-0.6
-0.7
pH
R2A_PIPES pH 4.5
+0.0
-0.1
-0.4
-0.5
-0.5
stress
R2A with Nickel (II) chloride 1696 uM
-0.0
-0.1
-0.4
-0.4
-0.4
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.1
-0.1
-0.4
-0.4
-0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
+0.0
-0.4
-0.4
-0.3
stress
R2A with Zinc chloride 2560 uM
-0.0
-0.2
-0.4
-0.1
-0.3
no stress control
no stress control
+0.0
-0.1
-0.3
-0.3
-0.4
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
-0.1
-0.2
-0.3
-0.3
no stress control
no stress control
-0.1
-0.1
-0.3
-0.2
-0.3
no stress control
no stress control
+0.0
+0.0
-0.2
-0.3
-0.4
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.0
-0.0
-0.3
-0.2
-0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.0
+0.1
-0.4
-0.2
-0.3
no stress control
no stress control
-0.1
-0.0
-0.3
-0.2
-0.2
no stress control
no stress control
-0.2
+0.1
-0.4
-0.1
-0.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.1
-0.1
-0.3
-0.1
-0.4
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
-0.1
-0.2
-0.1
-0.4
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
-0.1
-0.1
-0.3
-0.3
no stress control
no stress control
+0.0
-0.0
-0.2
-0.1
-0.3
stress
R2A with Zinc chloride 2560 uM
+0.1
+0.1
-0.3
-0.1
-0.3
no stress control
no stress control
+0.2
+0.1
-0.1
-0.1
-0.1
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