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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS07110 and LRK55_RS07115 are separated by 55 nucleotides
LRK55_RS07115 and LRK55_RS07120 are separated by 15 nucleotides
LRK55_RS07120 and LRK55_RS07125 overlap by 4 nucleotides
LRK55_RS07125 and LRK55_RS07130 are separated by 58 nucleotides
LRK55_RS07110: LRK55_RS07110 - hypothetical protein, at 1,539,392 to 1,539,673
_RS07110
LRK55_RS07115: LRK55_RS07115 - isochorismatase family protein, at 1,539,729 to 1,540,319
_RS07115
LRK55_RS07120: LRK55_RS07120 - hydantoinase B/oxoprolinase family protein, at 1,540,335 to 1,542,188
_RS07120
LRK55_RS07125: LRK55_RS07125 - hydantoinase/oxoprolinase family protein, at 1,542,185 to 1,544,260
_RS07125
LRK55_RS07130: LRK55_RS07130 - DUF1329 domain-containing protein, at 1,544,319 to 1,545,569
_RS07130
Group
Condition
LRK55
_RS07110
LRK55
_RS07115
LRK55
_RS07120
LRK55
_RS07125
LRK55
_RS07130
stress
R2A with Nickel (II) chloride 1696 uM
-0.3
-0.4
-0.4
-0.2
-0.6
pH
R2A_PIPES pH 4.5
-0.2
-0.1
-0.1
-0.4
-0.7
pH
R2A_PIPES pH 4.25
-0.4
+0.3
-0.4
-0.2
-0.8
no stress control
no stress control
-0.2
-0.7
+0.0
-0.1
-0.3
no stress control
no stress control
-0.0
-0.5
-0.1
-0.1
-0.3
stress
R2A with Zinc chloride 2560 uM
-0.0
-0.4
-0.0
-0.2
-0.4
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
-0.2
-0.2
+0.0
-0.4
stress
R2A with Nickel (II) chloride 1696 uM
-0.3
+0.2
-0.0
-0.1
-0.4
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.3
-0.1
+0.1
-0.1
-0.3
no stress control
no stress control
-0.0
-0.2
-0.1
-0.0
-0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
-0.0
-0.1
-0.1
-0.4
pH
R2A_PIPES pH 4.5
-0.0
+0.0
+0.0
-0.1
-0.4
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.1
+0.0
+0.0
-0.0
-0.3
pH
R2A_PIPES pH 4.25
-0.3
+0.3
+0.0
-0.2
-0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
-0.0
-0.0
+0.1
-0.4
no stress control
no stress control
-0.2
+0.0
+0.0
+0.0
-0.2
no stress control
no stress control
+0.0
-0.1
+0.0
-0.0
-0.2
stress
R2A with Zinc chloride 2560 uM
-0.3
+0.2
+0.1
+0.1
-0.3
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.0
+0.3
-0.1
-0.1
-0.2
no stress control
no stress control
+0.0
-0.3
+0.2
+0.1
-0.1
no stress control
no stress control
+0.1
+0.4
-0.2
+0.1
-0.4
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.0
+0.2
+0.1
-0.1
-0.1
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.3
+0.7
+0.1
-0.1
-0.2
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