Fitness for 5 genes in Rhodanobacter denitrificans MT42

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Top 23 experiments (either direction), sorted by average fitness

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500 ntLRK55_RS07050 and LRK55_RS07055 are separated by 167 nucleotidesLRK55_RS07055 and LRK55_RS07060 are separated by 177 nucleotidesLRK55_RS07060 and LRK55_RS07065 overlap by 8 nucleotidesLRK55_RS07065 and LRK55_RS07070 overlap by 4 nucleotides LRK55_RS07050: LRK55_RS07050 - D-aminoacyl-tRNA deacylase, at 1,522,769 to 1,523,209 _RS07050 LRK55_RS07055: LRK55_RS07055 - RNA polymerase sigma factor RpoD, at 1,523,377 to 1,525,254 _RS07055 LRK55_RS07060: LRK55_RS07060 - hypothetical protein, at 1,525,432 to 1,525,725 _RS07060 LRK55_RS07065: LRK55_RS07065 - GNAT family N-acetyltransferase, at 1,525,718 to 1,526,275 _RS07065 LRK55_RS07070: LRK55_RS07070 - tail fiber protein, at 1,526,272 to 1,526,805 _RS07070
Group Condition LRK55_RS07050 LRK55_RS07055 LRK55_RS07060 LRK55_RS07065 LRK55_RS07070
pH R2A_PIPES pH 4.25 -1.0 N.D. +0.3 -0.2 -0.3
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -0.7 N.D. -0.4 -0.0 +0.0
no stress control no stress control -0.7 N.D. +0.1 +0.1 +0.1
no stress control no stress control -0.7 N.D. +0.0 +0.4 -0.1
stress R2A with Metal_ion_mix_sitestressplate 2 x -0.6 N.D. +0.2 -0.0 +0.1
no stress control no stress control -0.4 N.D. +0.1 -0.1 +0.1
stress R2A_PIPES with Aluminum chloride 0.140625 mM -0.8 N.D. +0.2 +0.2 +0.2
no stress control no stress control -0.3 N.D. -0.2 +0.2 +0.2
pH R2A_PIPES pH 4.5 -0.3 N.D. +0.1 +0.2 -0.2
pH R2A_PIPES pH 4.25 -1.3 N.D. +0.6 +0.3 +0.4
no stress control no stress control -0.6 N.D. +0.3 +0.2 +0.3
stress R2A with Nickel (II) chloride 1696 uM -0.4 N.D. +0.3 +0.2 +0.1
stress R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM -0.3 N.D. +0.4 +0.0 +0.1
no stress control no stress control -0.5 N.D. +0.5 +0.1 +0.2
stress R2A with Zinc chloride 2560 uM -0.4 N.D. +0.2 +0.3 +0.2
stress R2A_PIPES with Cadmium chloride 64 uM +0.1 N.D. -0.0 +0.1 +0.1
stress R2A with Nickel (II) chloride 1696 uM -0.3 N.D. +0.4 +0.1 +0.0
pH R2A_PIPES pH 4.5 -0.4 N.D. +0.3 +0.3 +0.1
stress R2A with Metal_ion_mix_sitestressplate 2 x -0.4 N.D. +0.5 +0.1 +0.1
no stress control no stress control -0.4 N.D. +0.4 +0.1 +0.4
stress R2A_PIPES with Aluminum chloride 0.140625 mM -0.4 N.D. +0.5 +0.3 +0.3
stress R2A with Zinc chloride 2560 uM +0.2 N.D. +0.3 +0.2 +0.1
stress R2A_PIPES with Cadmium chloride 64 uM +0.0 N.D. +0.7 +0.3 +0.3
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