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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS06950 and LRK55_RS06955 are separated by 64 nucleotides
LRK55_RS06955 and LRK55_RS06960 are separated by 60 nucleotides
LRK55_RS06960 and LRK55_RS06965 are separated by 136 nucleotides
LRK55_RS06965 and LRK55_RS06970 overlap by 4 nucleotides
LRK55_RS06950: LRK55_RS06950 - c-type cytochrome, at 1,498,823 to 1,499,605
_RS06950
LRK55_RS06955: LRK55_RS06955 - thiol:disulfide interchange protein DsbA/DsbL, at 1,499,670 to 1,500,554
_RS06955
LRK55_RS06960: LRK55_RS06960 - thiol:disulfide interchange protein DsbA/DsbL, at 1,500,615 to 1,501,265
_RS06960
LRK55_RS06965: LRK55_RS06965 - endonuclease/exonuclease/phosphatase family protein, at 1,501,402 to 1,502,214
_RS06965
LRK55_RS06970: LRK55_RS06970 - hypothetical protein, at 1,502,211 to 1,502,624
_RS06970
Group
Condition
LRK55
_RS06950
LRK55
_RS06955
LRK55
_RS06960
LRK55
_RS06965
LRK55
_RS06970
stress
R2A with Zinc chloride 2560 uM
-3.4
-1.4
-0.8
-0.1
-0.8
stress
R2A with Zinc chloride 2560 uM
-2.8
-1.2
-0.7
-1.1
-0.7
no stress control
no stress control
-1.8
-1.2
-0.7
-1.0
-0.6
no stress control
no stress control
-1.6
-1.2
-0.4
-1.1
-0.5
pH
R2A_PIPES pH 4.25
-0.6
-3.7
-0.6
+0.2
+0.2
pH
R2A_PIPES pH 4.25
-0.7
-3.4
-0.7
+0.1
+0.1
no stress control
no stress control
-2.3
-0.9
-0.4
-0.6
-0.3
no stress control
no stress control
-1.9
-1.0
-0.4
-0.7
-0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-1.4
-0.9
-0.4
-0.8
-0.5
pH
R2A_PIPES pH 4.5
-1.3
-2.0
-0.1
-0.2
-0.3
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-1.7
-0.3
+0.2
-0.4
-0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-1.2
-0.4
+0.0
-0.8
-0.2
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.6
-0.9
-0.0
-1.0
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-1.7
-0.2
+0.1
-0.4
-0.3
no stress control
no stress control
-1.3
-0.5
-0.2
-0.3
-0.1
pH
R2A_PIPES pH 4.5
-1.3
-1.6
+0.2
+0.3
+0.1
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.3
-0.8
+0.0
-0.7
-0.1
no stress control
no stress control
-1.0
-0.5
+0.1
-0.2
+0.0
no stress control
no stress control
-1.3
-0.2
+0.1
+0.2
-0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.9
-1.5
-0.1
-0.1
-0.1
stress
R2A with Nickel (II) chloride 1696 uM
+0.3
-0.6
+0.1
-0.2
-0.3
stress
R2A with Nickel (II) chloride 1696 uM
+0.5
-0.5
+0.1
-0.3
-0.2
stress
R2A_PIPES with Cadmium chloride 64 uM
+1.6
-1.5
+0.1
-0.4
+0.1
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