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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS06745 and LRK55_RS06750 are separated by 294 nucleotides
LRK55_RS06750 and LRK55_RS06755 are separated by 94 nucleotides
LRK55_RS06755 and LRK55_RS06760 overlap by 4 nucleotides
LRK55_RS06760 and LRK55_RS06765 are separated by 94 nucleotides
LRK55_RS06745: LRK55_RS06745 - spore coat protein U domain-containing protein, at 1,454,802 to 1,455,350
_RS06745
LRK55_RS06750: LRK55_RS06750 - FAD-binding oxidoreductase, at 1,455,645 to 1,456,406
_RS06750
LRK55_RS06755: LRK55_RS06755 - ABC transporter ATP-binding protein, at 1,456,501 to 1,457,466
_RS06755
LRK55_RS06760: LRK55_RS06760 - ABC transporter permease, at 1,457,463 to 1,458,245
_RS06760
LRK55_RS06765: LRK55_RS06765 - pseudouridine synthase, at 1,458,340 to 1,459,059
_RS06765
Group
Condition
LRK55
_RS06745
LRK55
_RS06750
LRK55
_RS06755
LRK55
_RS06760
LRK55
_RS06765
stress
R2A with Nickel (II) chloride 1696 uM
-0.6
-0.1
-3.1
-2.5
+0.3
stress
R2A with Nickel (II) chloride 1696 uM
-0.4
+0.0
-2.3
-1.7
+0.2
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.6
-0.2
+0.7
+0.5
+0.0
stress
R2A with Zinc chloride 2560 uM
-0.6
-0.2
+0.7
+0.8
+0.4
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.3
+0.2
+0.7
+0.5
+0.1
stress
R2A with Metal_ion_mix_sitestressplate 2 x
-0.2
+0.1
+0.6
+0.5
+0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.0
-0.8
+1.0
+1.1
+0.0
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.4
+0.2
+0.6
+0.7
+0.2
no stress control
no stress control
-0.4
+0.2
+0.7
+0.8
+0.2
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
-0.1
+0.8
+0.8
+0.2
no stress control
no stress control
-0.1
+0.1
+0.7
+0.8
+0.2
no stress control
no stress control
+0.1
+0.1
+0.8
+0.7
-0.0
no stress control
no stress control
-0.4
+0.2
+0.8
+0.8
+0.3
no stress control
no stress control
-0.1
+0.2
+0.7
+0.7
+0.4
no stress control
no stress control
-0.1
+0.2
+0.8
+0.7
+0.3
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
-0.2
+0.2
+0.9
+0.9
+0.2
stress
R2A with Zinc chloride 2560 uM
-0.1
-0.0
+1.1
+0.8
+0.3
pH
R2A_PIPES pH 4.5
-0.7
+0.2
+1.2
+1.1
+0.3
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.2
-0.6
+1.2
+1.3
+0.4
no stress control
no stress control
-0.1
+0.4
+0.8
+0.9
+0.4
pH
R2A_PIPES pH 4.5
-0.4
+0.3
+1.2
+1.1
+0.4
pH
R2A_PIPES pH 4.25
-0.1
+0.3
+2.4
+2.6
+0.3
pH
R2A_PIPES pH 4.25
-0.1
+0.5
+2.5
+2.5
+0.4
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