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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodanobacter denitrificans MT42
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Number of genes on each side:
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Top 23 experiments (either direction), sorted by average fitness
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500 nt
LRK55_RS06380 and LRK55_RS06385 are separated by 162 nucleotides
LRK55_RS06385 and LRK55_RS06390 are separated by 210 nucleotides
LRK55_RS06390 and LRK55_RS06395 are separated by 102 nucleotides
LRK55_RS06395 and LRK55_RS06400 are separated by 94 nucleotides
LRK55_RS06380: LRK55_RS06380 - RcnB family protein, at 1,378,260 to 1,378,676
_RS06380
LRK55_RS06385: LRK55_RS06385 - sodium-translocating pyrophosphatase, at 1,378,839 to 1,380,911
_RS06385
LRK55_RS06390: LRK55_RS06390 - prolyl oligopeptidase family serine peptidase, at 1,381,122 to 1,383,206
_RS06390
LRK55_RS06395: LRK55_RS06395 - 2OG-Fe(II) oxygenase, at 1,383,309 to 1,384,163
_RS06395
LRK55_RS06400: LRK55_RS06400 - inorganic diphosphatase, at 1,384,258 to 1,384,797
_RS06400
Group
Condition
LRK55
_RS06380
LRK55
_RS06385
LRK55
_RS06390
LRK55
_RS06395
LRK55
_RS06400
stress
R2A with Nickel (II) chloride 1696 uM
+0.2
-0.2
+0.0
+0.1
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
-0.1
+0.3
-0.1
+0.2
N.D.
no stress control
no stress control
+0.1
+0.0
-0.0
+0.1
N.D.
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.1
+0.0
-0.2
+0.4
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.2
+0.0
+0.1
+0.0
N.D.
no stress control
no stress control
-0.1
+0.2
+0.0
+0.1
N.D.
no stress control
no stress control
-0.0
+0.2
-0.0
+0.2
N.D.
stress
R2A with Nickel (II) chloride 1696 uM
+0.2
+0.0
-0.0
+0.2
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
-0.1
+0.2
-0.1
+0.4
N.D.
stress
R2A with Metal_ion_mix_sitestressplate 2 x
+0.3
+0.1
-0.0
+0.1
N.D.
no stress control
no stress control
-0.0
+0.1
-0.0
+0.4
N.D.
stress
R2A with Zinc chloride 2560 uM
-0.0
+0.2
+0.0
+0.2
N.D.
stress
R2A with Zinc chloride 2560 uM
+0.1
+0.1
+0.0
+0.2
N.D.
pH
R2A_PIPES pH 4.5
+0.3
+0.1
+0.1
+0.1
N.D.
stress
R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
+0.2
+0.1
+0.0
+0.3
N.D.
pH
R2A_PIPES pH 4.25
+0.3
+0.2
-0.3
+0.4
N.D.
stress
R2A_PIPES with Aluminum chloride 0.140625 mM
+0.2
-0.0
+0.0
+0.4
N.D.
pH
R2A_PIPES pH 4.5
+0.4
+0.0
+0.1
+0.3
N.D.
no stress control
no stress control
+0.3
+0.2
+0.1
+0.2
N.D.
no stress control
no stress control
+0.0
+0.3
-0.0
+0.5
N.D.
stress
R2A_PIPES with Cadmium chloride 64 uM
+0.1
+0.0
-0.1
+0.8
N.D.
no stress control
no stress control
+0.2
+0.2
+0.1
+0.4
N.D.
pH
R2A_PIPES pH 4.25
+0.6
+0.1
+0.0
+0.5
N.D.
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